Variant report

Variant	rs549623379
Chromosome Location	chr3:134142589-134142590
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134091888..134095593-chr3:134142304..134147270,4	MCF-7	breast:
2	chr17:56707823..56710437-chr3:134140925..134142745,2	MCF-7	breast:
3	chr3:134139549..134143630-chr3:134144649..134147393,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114019	Chromatin interaction
ENSG00000212195	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1007607	chr3:134131521-134156814	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	n/a
5	nsv527126	chr3:134142093-134143919	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134126400-134146000	Weak transcription	Pancreas	Pancrea
2	chr3:134141200-134143200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:134141200-134146000	Weak transcription	Adipose Nuclei	Adipose
4	chr3:134141600-134142600	Enhancers	Brain Hippocampus Middle	brain
5	chr3:134141600-134143000	Enhancers	Fetal Muscle Leg	muscle
6	chr3:134141600-134143200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:134141600-134145800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:134141800-134142600	Enhancers	Brain Angular Gyrus	brain
9	chr3:134141800-134142600	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:134141800-134142600	Enhancers	HSMM	muscle
11	chr3:134141800-134142600	Enhancers	NHDF-Ad	bronchial
12	chr3:134141800-134142800	Enhancers	Fetal Muscle Trunk	muscle
13	chr3:134141800-134144000	Enhancers	HepG2	liver
14	chr3:134142000-134143000	Enhancers	Fetal Brain Male	brain
15	chr3:134142000-134148800	Weak transcription	Spleen	Spleen
16	chr3:134142400-134142800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:134142400-134145400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:134142400-134145400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:134142400-134145400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:134142400-134147600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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