Variant report

Variant	rs549636400
Chromosome Location	chr5:166720232-166720233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869374	chr5:166488702-166817411	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1032183	chr5:166612188-166732287	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv883100	chr5:166718807-166808602	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:166714800-166721600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:166715000-166720800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:166715000-166722200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:166715000-166722400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:166718800-166722400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:166718800-166722400	Weak transcription	Aorta	Aorta
7	chr5:166719000-166721000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:166719800-166720800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:166719800-166721200	Strong transcription	H9 Cell Line	embryonic stem cell
10	chr5:166719800-166722000	Enhancers	Hela-S3	cervix
11	chr5:166720000-166722200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr5:166720000-166722200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:166720200-166720800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr5:166720200-166721000	Strong transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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