The 2.0 version of rSNPBase

Variant report

Variant rs549639955
Chromosome Location chr6:36070163-36070164
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:36022000-36088800 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr6:36051600-36088800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr6:36051800-36070600 Weak transcription Pancreas Pancrea
4 chr6:36051800-36070600 Weak transcription Psoas Muscle Psoas
5 chr6:36051800-36070800 Weak transcription Aorta Aorta
6 chr6:36051800-36075800 Weak transcription H9 Cell Line embryonic stem cell
7 chr6:36052000-36070600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr6:36052000-36070600 Weak transcription Brain Angular Gyrus brain
9 chr6:36052000-36070600 Weak transcription NHLF lung
10 chr6:36052000-36070800 Weak transcription Esophagus oesophagus
11 chr6:36052000-36075200 Weak transcription Right Ventricle heart
12 chr6:36052200-36070600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr6:36052200-36070800 Weak transcription Gastric stomach
14 chr6:36052200-36071400 Weak transcription H1 Cell Line embryonic stem cell
15 chr6:36060200-36075000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr6:36060600-36070600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr6:36060600-36071400 Weak transcription Fetal Brain Female brain
18 chr6:36060600-36080800 Weak transcription Ovary ovary
19 chr6:36060800-36072000 Weak transcription Brain Germinal Matrix brain
20 chr6:36063000-36074800 Weak transcription Placenta Amnion Placenta Amnion
21 chr6:36063200-36070400 Weak transcription Fetal Kidney kidney
22 chr6:36063200-36080600 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr6:36063400-36070200 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr6:36063400-36071400 Weak transcription Fetal Brain Male brain
25 chr6:36063400-36080600 Strong transcription Monocytes-CD14+_RO01746 blood
26 chr6:36063600-36070200 Weak transcription Duodenum Mucosa Duodenum
27 chr6:36063600-36070400 Weak transcription Rectal Smooth Muscle rectum
28 chr6:36063600-36080800 Strong transcription Primary neutrophils fromperipheralblood blood
29 chr6:36063800-36071000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr6:36064400-36070800 Weak transcription Lung lung
31 chr6:36064600-36076000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
32 chr6:36064800-36070400 Weak transcription Brain Anterior Caudate brain
33 chr6:36064800-36070600 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr6:36065000-36070200 Weak transcription Left Ventricle heart
35 chr6:36065000-36070600 Weak transcription Spleen Spleen
36 chr6:36065200-36070200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr6:36065200-36070600 Weak transcription Colonic Mucosa Colon
38 chr6:36065400-36082600 Weak transcription Stomach Mucosa stomach
39 chr6:36065600-36075600 Weak transcription A549 lung
40 chr6:36066600-36070200 Enhancers Primary T helper cells PMA-I stimulated --
41 chr6:36066600-36071600 Enhancers Primary T killer naive cells fromperipheralblood blood
42 chr6:36067000-36082800 Weak transcription ES-I3 Cell Line embryonic stem cell
43 chr6:36067200-36070600 Weak transcription HSMMtube muscle
44 chr6:36067200-36070800 Weak transcription HUES64 Cell Line embryonic stem cell
45 chr6:36067200-36072800 Strong transcription Rectal Mucosa Donor 31 rectum
46 chr6:36067200-36074200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr6:36067200-36075000 Weak transcription iPS-18 Cell Line embryonic stem cell
48 chr6:36067400-36081000 Strong transcription Primary monocytes fromperipheralblood blood
49 chr6:36067600-36070600 Enhancers Primary T helper naive cells from peripheral blood blood
50 chr6:36067600-36080000 Strong transcription Dnd41 blood

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Last update: Aug 31, 2015