Variant report

Variant rs549643528
Chromosome Location chr7:27169483-27169484
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:27146400-27169600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr7:27162800-27169600 Flanking Active TSS Stomach Smooth Muscle stomach
3 chr7:27163200-27170600 Strong transcription Primary hematopoietic stem cells short term culture blood
4 chr7:27164200-27169600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr7:27167800-27171000 Active TSS Duodenum Smooth Muscle Duodenum
6 chr7:27168400-27169600 Flanking Active TSS Rectal Smooth Muscle rectum
7 chr7:27168400-27169600 Enhancers Spleen Spleen
8 chr7:27168400-27169800 Transcr. at gene 5' and 3' Fetal Intestine Small intestine
9 chr7:27168400-27169800 Flanking Active TSS Skeletal Muscle Female skeletal muscle
10 chr7:27168800-27169600 Flanking Active TSS Fetal Intestine Large intestine
11 chr7:27168800-27169800 Flanking Active TSS Colonic Mucosa Colon
12 chr7:27168800-27170800 Active TSS Esophagus oesophagus
13 chr7:27168800-27170800 Active TSS Lung lung
14 chr7:27168800-27171400 Active TSS Fetal Kidney kidney
15 chr7:27168800-27171800 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
16 chr7:27169000-27169600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr7:27169000-27169600 Flanking Active TSS Fetal Adrenal Gland Adrenal Gland
18 chr7:27169000-27169600 Flanking Active TSS HepG2 liver
19 chr7:27169000-27169800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr7:27169000-27169800 Flanking Active TSS Adipose Nuclei Adipose
21 chr7:27169000-27169800 Flanking Active TSS Fetal Muscle Trunk muscle
22 chr7:27169000-27169800 Flanking Active TSS Rectal Mucosa Donor 31 rectum
23 chr7:27169000-27169800 Flanking Active TSS Skeletal Muscle Male skeletal muscle
24 chr7:27169000-27169800 Flanking Active TSS HUVEC blood vessel
25 chr7:27169000-27169800 Flanking Active TSS NHLF lung
26 chr7:27169000-27170600 Bivalent Enhancer iPS DF 19.11 Cell Line embryonic stem cell
27 chr7:27169000-27170600 Active TSS Pancreas Pancrea
28 chr7:27169000-27170800 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
29 chr7:27169000-27170800 Bivalent/Poised TSS Fetal Lung lung
30 chr7:27169000-27171200 Active TSS Aorta Aorta
31 chr7:27169000-27171400 Active TSS Right Atrium heart
32 chr7:27169200-27169600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr7:27169200-27169600 Enhancers Sigmoid Colon Sigmoid Colon
34 chr7:27169200-27169600 Flanking Active TSS NHEK skin
35 chr7:27169200-27169800 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
36 chr7:27169200-27169800 Flanking Active TSS Muscle Satellite Cultured Cells --
37 chr7:27169200-27169800 Flanking Active TSS Fetal Muscle Leg muscle
38 chr7:27169200-27170600 Active TSS Rectal Mucosa Donor 29 rectum
39 chr7:27169200-27170800 Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr7:27169200-27170800 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr7:27169200-27170800 Active TSS Breast Myoepithelial Primary Cells Breast
42 chr7:27169200-27170800 Active TSS Fetal Stomach stomach
43 chr7:27169200-27170800 Active TSS HSMM muscle
44 chr7:27169200-27170800 Bivalent/Poised TSS NH-A brain
45 chr7:27169200-27170800 Active TSS NHDF-Ad bronchial
46 chr7:27169400-27169600 Bivalent Enhancer ES-UCSF4 Cell Line embryonic stem cell
47 chr7:27169400-27169600 Flanking Active TSS Stomach Mucosa stomach
48 chr7:27169400-27169800 Bivalent/Poised TSS Primary neutrophils fromperipheralblood blood
49 chr7:27169400-27169800 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr7:27169400-27169800 Flanking Bivalent TSS/Enh Foreskin Fibroblast Primary Cells skin01 Skin

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