Variant report

Variant	rs549658475
Chromosome Location	chr6:81167717-81167718
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81159444..81161746-chr6:81166176..81167812,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1018028	chr6:81138011-81201697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1019932	chr6:81155458-81217868	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81162800-81168400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81162800-81168400	Enhancers	HMEC	breast
3	chr6:81163000-81179800	Weak transcription	Right Ventricle	heart
4	chr6:81163200-81168200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:81163200-81169800	Weak transcription	Fetal Heart	heart
6	chr6:81163400-81168400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:81166200-81168200	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr6:81166200-81168400	Enhancers	NHEK	skin
9	chr6:81166200-81168400	Enhancers	NHLF	lung
10	chr6:81166400-81167800	Enhancers	Liver	Liver
11	chr6:81166400-81168200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:81166400-81168400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:81166400-81168400	Enhancers	NHDF-Ad	bronchial
14	chr6:81166600-81168000	Enhancers	Osteobl	bone
15	chr6:81166600-81168200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:81166600-81168400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:81166600-81168400	Enhancers	Fetal Stomach	stomach
18	chr6:81166800-81167800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:81166800-81167800	Enhancers	Brain Angular Gyrus	brain
20	chr6:81166800-81167800	Enhancers	Hela-S3	cervix
21	chr6:81166800-81168000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:81166800-81168000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:81166800-81168000	Enhancers	Brain Hippocampus Middle	brain
24	chr6:81166800-81168200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:81166800-81168200	Enhancers	Colon Smooth Muscle	Colon
26	chr6:81166800-81168200	Enhancers	Fetal Muscle Leg	muscle
27	chr6:81166800-81168200	Enhancers	Rectal Smooth Muscle	rectum
28	chr6:81166800-81168200	Enhancers	HSMM	muscle
29	chr6:81166800-81168400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:81166800-81168400	Enhancers	Brain Anterior Caudate	brain
31	chr6:81166800-81168400	Enhancers	Placenta Amnion	Placenta Amnion
32	chr6:81166800-81168400	Enhancers	NH-A	brain
33	chr6:81167000-81167800	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr6:81167000-81168000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:81167000-81168200	Enhancers	Brain Germinal Matrix	brain
36	chr6:81167200-81167800	Enhancers	Brain Cingulate Gyrus	brain
37	chr6:81167200-81168400	Enhancers	Fetal Lung	lung
38	chr6:81167400-81167800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:81167600-81168400	Enhancers	HUVEC	blood vessel
40	chr6:81167600-81170200	Weak transcription	HSMMtube	muscle
41	chr6:81167600-81175000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:81167600-81181400	Weak transcription	Ovary	ovary
43	chr6:81167600-81184800	Weak transcription	Pancreas	Pancrea

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