Variant report

Variant	rs549659965
Chromosome Location	chr10:49590096-49590097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49587453..49590173-chr10:49593697..49595801,2	K562	blood:
2	chr10:49589540..49591381-chr10:49641567..49643143,2	K562	blood:
3	chr10:49584975..49587441-chr10:49590002..49593282,3	K562	blood:
4	chr10:49584866..49587796-chr10:49589937..49592814,2	MCF-7	breast:
5	chr10:49584988..49587799-chr10:49588143..49591502,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv3421111	chr10:49590046-49592144	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49573600-49591200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:49585200-49591200	Weak transcription	Fetal Heart	heart
3	chr10:49586200-49591200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:49586400-49592400	Weak transcription	Fetal Kidney	kidney
5	chr10:49586400-49592600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:49587600-49599600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:49589200-49591200	Weak transcription	K562	blood
8	chr10:49589600-49591200	Weak transcription	HSMM	muscle
9	chr10:49589600-49592000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:49589800-49590200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr10:49589800-49590200	ZNF genes & repeats	Aorta	Aorta
12	chr10:49589800-49590200	ZNF genes & repeats	Fetal Lung	lung
13	chr10:49589800-49590200	ZNF genes & repeats	Left Ventricle	heart
14	chr10:49589800-49590200	ZNF genes & repeats	Pancreas	Pancrea
15	chr10:49589800-49590200	Enhancers	A549	lung
16	chr10:49589800-49590400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:49589800-49590400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
18	chr10:49589800-49590600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:49590000-49590200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr10:49590000-49590200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:49590000-49590200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:49590000-49590200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:49590000-49590200	ZNF genes & repeats	Fetal Muscle Leg	muscle
24	chr10:49590000-49590200	ZNF genes & repeats	Ovary	ovary
25	chr10:49590000-49590200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
26	chr10:49590000-49590200	ZNF genes & repeats	HSMMtube	muscle
27	chr10:49590000-49590400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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