Variant report

Variant	rs549664856
Chromosome Location	chr7:65669179-65669180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RPC155	chr7:65669077-65669693	Hela-S3	cervix:	n/a	n/a
2	RFX5	chr7:65669096-65673639	SK-N-SH	brain:	n/a	chr7:65670033-65670048 chr7:65670030-65670045 chr7:65670031-65670045 chr7:65670034-65670043 chr7:65670032-65670049 chr7:65670033-65670048 chr7:65670033-65670048
3	SREBP2	chr7:65669177-65670804	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
TPST1	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
4	esv3375675	chr7:65669142-65671690	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65660800-65669800	Weak transcription	Spleen	Spleen
2	chr7:65661600-65669400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:65663600-65669600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:65663600-65669600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:65663800-65669600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:65664200-65669600	Weak transcription	HSMMtube	muscle
7	chr7:65665200-65669600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:65665200-65669600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:65665400-65669600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:65667600-65669400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:65667600-65669400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:65667600-65669600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:65667800-65669400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:65667800-65669400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr7:65667800-65669400	Enhancers	HepG2	liver
16	chr7:65667800-65669600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr7:65667800-65669600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr7:65668200-65669400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:65668400-65669400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr7:65669000-65669200	Weak transcription	Liver	Liver

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