Variant report

Variant	rs549673827
Chromosome Location	chr3:79022161-79022162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:79019214..79022375-chr3:79066992..79070586,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169855	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv834744	chr3:78911545-79076470	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3343269	chr3:79021812-79023810	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79001000-79024200	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:79006800-79023600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:79007000-79023400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:79011400-79027400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:79015400-79022200	Weak transcription	Ovary	ovary
6	chr3:79016800-79023600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:79016800-79024800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:79018000-79027600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:79018200-79027600	Weak transcription	Brain Angular Gyrus	brain
10	chr3:79018600-79024400	Weak transcription	Fetal Lung	lung
11	chr3:79018600-79027600	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:79018600-79027600	Weak transcription	Brain Substantia Nigra	brain
13	chr3:79018800-79022200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:79018800-79023000	Weak transcription	NHDF-Ad	bronchial
15	chr3:79019000-79022200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:79019000-79022800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:79019000-79023600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:79019200-79023000	Weak transcription	HSMM	muscle
19	chr3:79019200-79025400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:79019600-79025400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:79019600-79027400	Weak transcription	Brain Anterior Caudate	brain
22	chr3:79020200-79022400	Enhancers	HepG2	liver
23	chr3:79020600-79027800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:79021200-79022400	Enhancers	HMEC	breast
25	chr3:79021600-79022400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:79021600-79023200	Enhancers	NHEK	skin
27	chr3:79021800-79022200	Enhancers	Psoas Muscle	Psoas
28	chr3:79021800-79022200	Enhancers	Rectal Smooth Muscle	rectum
29	chr3:79021800-79022800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:79022000-79022200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:79022000-79022200	Enhancers	A549	lung
32	chr3:79022000-79022600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:79022000-79023000	Enhancers	Osteobl	bone
34	chr3:79022000-79023800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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