Variant report

Variant	rs549677575
Chromosome Location	chr1:85155422-85155423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:78469181..78471632-chr1:85154975..85157700,2	K562	blood:
2	chr1:84969596..84972494-chr1:85154864..85156849,3	K562	blood:
3	chr1:85153044..85155913-chr1:85168206..85170903,2	K562	blood:
4	chr1:85038587..85040484-chr1:85154316..85157145,3	K562	blood:
5	chr1:84970994..84973830-chr1:85154472..85157447,5	K562	blood:
6	chr1:84542242..84543745-chr1:85154770..85157524,2	K562	blood:

Variant related genes	Relation type
ENSG00000271576	Chromatin interaction
ENSG00000174021	Chromatin interaction
ENSG00000117151	Chromatin interaction
ENSG00000162616	Chromatin interaction
ENSG00000273338	Chromatin interaction
ENSG00000122432	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349532	chr1:85154814-85157812	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85152600-85156800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:85153600-85157000	Active TSS	K562	blood
3	chr1:85153600-85157400	Active TSS	Stomach Smooth Muscle	stomach
4	chr1:85154000-85155600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr1:85154000-85156800	Active TSS	GM12878-XiMat	blood
6	chr1:85154200-85155600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:85154400-85156800	Active TSS	Fetal Intestine Large	intestine
8	chr1:85154400-85156800	Active TSS	Fetal Intestine Small	intestine
9	chr1:85154400-85157000	Active TSS	H1 Cell Line	embryonic stem cell
10	chr1:85154400-85157200	Active TSS	A549	lung
11	chr1:85154600-85155600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr1:85154600-85155600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:85154600-85155600	Flanking Active TSS	Liver	Liver
14	chr1:85154600-85155600	Enhancers	Placenta Amnion	Placenta Amnion
15	chr1:85154600-85155600	Active TSS	Right Atrium	heart
16	chr1:85154600-85156600	Active TSS	Fetal Brain Female	brain
17	chr1:85154600-85156800	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr1:85154600-85156800	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr1:85154600-85157000	Active TSS	Psoas Muscle	Psoas
20	chr1:85154600-85157400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:85154800-85156600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:85154800-85156600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:85154800-85156600	Active TSS	Fetal Muscle Leg	muscle
24	chr1:85154800-85156800	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr1:85154800-85156800	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr1:85154800-85157000	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr1:85154800-85157000	Active TSS	Aorta	Aorta
28	chr1:85154800-85157200	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr1:85154800-85157600	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr1:85155000-85155600	Flanking Active TSS	Primary T cells from cord blood	blood
31	chr1:85155000-85155600	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr1:85155000-85155600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr1:85155000-85155600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr1:85155000-85155600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr1:85155000-85155600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:85155000-85155600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr1:85155000-85156400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr1:85155000-85156400	Active TSS	Fetal Muscle Trunk	muscle
39	chr1:85155000-85156600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr1:85155000-85156600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
41	chr1:85155000-85156600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr1:85155000-85157000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr1:85155000-85157000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:85155000-85157000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr1:85155000-85157000	Active TSS	Right Ventricle	heart
46	chr1:85155000-85157200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr1:85155000-85157400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
48	chr1:85155000-85157400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:85155200-85155600	Flanking Active TSS	Primary B cells from peripheral blood	blood
50	chr1:85155200-85155600	Flanking Active TSS	Primary T cells fromperipheralblood	blood

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