Variant report

Variant	rs549693760
Chromosome Location	chr6:37533669-37533670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37533306..37535085-chr6:37536114..37538057,2	K562	blood:
2	chr6:37526579..37529682-chr6:37532707..37536538,3	K562	blood:
3	chr6:37451515..37452625-chr6:37533585..37534691,7	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv522098	chr6:37532103-37545923	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv522466	chr6:37532103-37545923	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37510800-37533800	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:37521200-37533800	Enhancers	Primary B cells from cord blood	blood
3	chr6:37528400-37533800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:37528600-37533800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr6:37528600-37533800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:37528800-37535600	Enhancers	Fetal Brain Male	brain
7	chr6:37532400-37533800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
8	chr6:37532600-37534200	Flanking Active TSS	GM12878-XiMat	blood
9	chr6:37532800-37533800	Enhancers	Left Ventricle	heart
10	chr6:37532800-37534400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:37533000-37533800	Bivalent Enhancer	Fetal Kidney	kidney
12	chr6:37533000-37533800	Bivalent Enhancer	HSMMtube	muscle
13	chr6:37533000-37534000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:37533000-37534200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr6:37533000-37534200	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:37533000-37534200	Bivalent Enhancer	Fetal Lung	lung
17	chr6:37533000-37534400	Flanking Active TSS	Brain Germinal Matrix	brain
18	chr6:37533200-37533800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr6:37533200-37533800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:37533200-37533800	Enhancers	Fetal Heart	heart
21	chr6:37533200-37534000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:37533200-37534000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr6:37533200-37534000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
24	chr6:37533200-37534200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:37533200-37534200	Flanking Active TSS	Fetal Thymus	thymus
26	chr6:37533200-37534400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:37533200-37534400	Enhancers	Lung	lung
28	chr6:37533400-37533800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:37533400-37533800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:37533400-37533800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:37533400-37533800	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:37533400-37533800	Enhancers	Primary T cells from cord blood	blood
33	chr6:37533400-37533800	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr6:37533400-37533800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:37533400-37533800	Flanking Active TSS	Brain Cingulate Gyrus	brain
36	chr6:37533400-37533800	Bivalent Enhancer	Fetal Intestine Small	intestine
37	chr6:37533400-37533800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
38	chr6:37533400-37533800	Enhancers	HSMM	muscle
39	chr6:37533400-37533800	Bivalent Enhancer	NHDF-Ad	bronchial
40	chr6:37533400-37534200	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr6:37533400-37534200	Active TSS	H1 Cell Line	embryonic stem cell
42	chr6:37533400-37534200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:37533400-37534200	Active TSS	H9 Cell Line	embryonic stem cell
44	chr6:37533400-37534200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr6:37533400-37534200	Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr6:37533400-37534200	Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr6:37533400-37534200	Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr6:37533400-37534200	Bivalent Enhancer	Placenta	Placenta
49	chr6:37533400-37534400	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr6:37533400-37534400	Active TSS	HUES6 Cell Line	embryonic stem cell

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