Variant report

Variant	rs549695516
Chromosome Location	chr6:110571093-110571094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3474885	chr6:110569364-110572206	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3474887	chr6:110569723-110571890	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv14089	chr6:110569724-110571891	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3474888	chr6:110569737-110571886	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv604502	chr6:110569825-110571154	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv604503	chr6:110569825-110571261	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv604504	chr6:110569825-110571293	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv604505	chr6:110569825-110571515	Strong transcription Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv604506	chr6:110569825-110571641	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv604507	chr6:110570110-110571641	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv604508	chr6:110570196-110571515	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv604509	chr6:110570196-110571641	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv604510	chr6:110570460-110571515	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv604512	chr6:110570567-110571293	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv604513	chr6:110570622-110571293	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv604514	chr6:110570675-110571515	Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv604515	chr6:110570734-110571641	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110539000-110580200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:110547000-110576600	Weak transcription	Pancreas	Pancrea
3	chr6:110549400-110580400	Weak transcription	Brain Angular Gyrus	brain
4	chr6:110550600-110608200	Weak transcription	Fetal Kidney	kidney
5	chr6:110554000-110571400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:110554400-110572600	Weak transcription	Aorta	Aorta
7	chr6:110556000-110571400	Weak transcription	Primary T cells from cord blood	blood
8	chr6:110559200-110572400	Weak transcription	Liver	Liver
9	chr6:110559400-110571200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:110559400-110572800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:110559400-110573400	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:110567400-110574200	Weak transcription	Fetal Stomach	stomach
13	chr6:110567400-110604600	Weak transcription	Ovary	ovary
14	chr6:110567600-110604600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:110568000-110571200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:110569800-110571400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:110570400-110571600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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