Variant report

Variant	rs549703963
Chromosome Location	chr2:180409176-180409177
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875470	chr2:180400021-180432529	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv523865	chr2:180403128-180426764	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv437591	chr2:180409011-180423183	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180403800-180409800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180404000-180410000	Strong transcription	Liver	Liver
3	chr2:180404200-180409800	Weak transcription	Gastric	stomach
4	chr2:180405400-180410600	Enhancers	HepG2	liver
5	chr2:180407000-180411400	Weak transcription	Right Atrium	heart
6	chr2:180407800-180410000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:180408200-180409200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:180408400-180409600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:180408400-180409600	Enhancers	Brain Germinal Matrix	brain
10	chr2:180408400-180410600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:180408400-180423400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:180408600-180409800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr2:180408800-180414200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr2:180408800-180415600	Weak transcription	Fetal Brain Female	brain
15	chr2:180409000-180409800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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