Variant report

Variant	rs549734278
Chromosome Location	chr7:102702710-102702711
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102673845..102676724-chr7:102700499..102703034,2	K562	blood:
2	chr7:102430529..102431497-chr7:102702527..102703245,2	K562	blood:
3	chr7:102701175..102706120-chr7:102711307..102716730,7	K562	blood:
4	chr7:102696664..102700307-chr7:102700461..102702793,3	K562	blood:
5	chr7:102700472..102704073-chr7:102705229..102707917,4	K562	blood:
6	chr7:102611593..102615684-chr7:102700169..102704441,4	K562	blood:
7	chr7:102676967..102679361-chr7:102702578..102705004,2	K562	blood:
8	chr7:102389656..102391894-chr7:102702213..102705034,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000170632	Chromatin interaction
ENSG00000230257	Chromatin interaction
ENSG00000161040	Chromatin interaction
ENSG00000222011	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	esv1793320	chr7:102677917-102706209	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv526764	chr7:102701826-102737251	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102679200-102713800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:102684200-102708000	Weak transcription	Pancreas	Pancrea
3	chr7:102692800-102712800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:102701600-102702800	Enhancers	HUVEC	blood vessel
5	chr7:102701800-102702800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:102701800-102702800	Enhancers	K562	blood
7	chr7:102702000-102702800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:102702000-102702800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:102702000-102702800	Enhancers	NH-A	brain
10	chr7:102702200-102713800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:102702200-102714600	Weak transcription	Ovary	ovary
12	chr7:102702600-102702800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:102702600-102702800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:102702600-102702800	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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