Variant report

Variant	rs549739642
Chromosome Location	chr6:119382118-119382119
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases
2	nsv528632	chr6:119380885-119397860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119378200-119388400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:119380800-119383000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:119380800-119384400	Weak transcription	Fetal Lung	lung
4	chr6:119381200-119382600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:119381200-119383000	Enhancers	K562	blood
6	chr6:119381400-119382200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:119381400-119382400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:119381400-119382400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:119381400-119382400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:119381600-119382200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:119381800-119382600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr6:119382000-119382400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:119382000-119384800	Weak transcription	Fetal Intestine Large	intestine
14	chr6:119382000-119387200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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