Variant report

Variant rs549753979
Chromosome Location chr3:52002020-52002021
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52000200-52002200 Active TSS HSMMtube muscle
2 chr3:52000400-52002600 Active TSS Fetal Kidney kidney
3 chr3:52000400-52002600 Active TSS Rectal Smooth Muscle rectum
4 chr3:52000600-52002200 Active TSS Brain Substantia Nigra brain
5 chr3:52000600-52002200 Active TSS Gastric stomach
6 chr3:52000600-52002400 Active TSS NHDF-Ad bronchial
7 chr3:52000600-52002600 Active TSS Brain Anterior Caudate brain
8 chr3:52000800-52002200 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr3:52000800-52002200 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr3:52000800-52002200 Active TSS Brain Cingulate Gyrus brain
11 chr3:52000800-52002200 Active TSS Right Atrium heart
12 chr3:52000800-52002400 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr3:52000800-52002400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr3:52000800-52002400 Active TSS Pancreatic Islets Pancreatic Islet
15 chr3:52000800-52002400 Active TSS NHLF lung
16 chr3:52000800-52002600 Active TSS H9 Cell Line embryonic stem cell
17 chr3:52000800-52002600 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr3:52000800-52002600 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr3:52000800-52002600 Active TSS A549 lung
20 chr3:52001000-52002200 Active TSS Breast Myoepithelial Primary Cells Breast
21 chr3:52001000-52002200 Active TSS Left Ventricle heart
22 chr3:52001000-52002200 Active TSS Lung lung
23 chr3:52001000-52002400 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr3:52001000-52002600 Active TSS HUES64 Cell Line embryonic stem cell
25 chr3:52001000-52002600 Active TSS Aorta Aorta
26 chr3:52001200-52002200 Active TSS iPS-18 Cell Line embryonic stem cell
27 chr3:52001200-52002200 Active TSS Brain Angular Gyrus brain
28 chr3:52001200-52002200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
29 chr3:52001200-52002200 Active TSS Colon Smooth Muscle Colon
30 chr3:52001200-52002200 Active TSS Fetal Brain Female brain
31 chr3:52001200-52002200 Active TSS Fetal Lung lung
32 chr3:52001200-52002200 Active TSS Fetal Stomach stomach
33 chr3:52001200-52002200 Active TSS Psoas Muscle Psoas
34 chr3:52001200-52002200 Active TSS Hela-S3 cervix
35 chr3:52001200-52002200 Active TSS K562 blood
36 chr3:52001200-52002400 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr3:52001200-52002400 Active TSS iPS DF 19.11 Cell Line embryonic stem cell
38 chr3:52001200-52002400 Active TSS Ovary ovary
39 chr3:52001200-52002600 Active TSS ES-I3 Cell Line embryonic stem cell
40 chr3:52001200-52002600 Active TSS HUES48 Cell Line embryonic stem cell
41 chr3:52001200-52002600 Active TSS HUES6 Cell Line embryonic stem cell
42 chr3:52001200-52002600 Active TSS iPS-15b Cell Line embryonic stem cell
43 chr3:52001200-52002600 Active TSS iPS-20b Cell Line embryonic stem cell
44 chr3:52001200-52002600 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
45 chr3:52001400-52002200 Active TSS H1 Cell Line embryonic stem cell
46 chr3:52001400-52002200 Active TSS ES-UCSF4 Cell Line embryonic stem cell
47 chr3:52001400-52002200 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
48 chr3:52001400-52002400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
49 chr3:52001600-52002200 Flanking Active TSS Primary B cells from cord blood blood
50 chr3:52001600-52002200 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells short term culture blood

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