The 2.0 version of rSNPBase

Variant report

Variant rs549758100
Chromosome Location chr11:10258957-10258958
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:10235400-10263400 Weak transcription Breast Myoepithelial Primary Cells Breast
2 chr11:10240600-10259800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
3 chr11:10247800-10259200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
4 chr11:10252200-10264200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr11:10253000-10268200 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr11:10254000-10259800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr11:10254000-10263400 Weak transcription Ovary ovary
8 chr11:10254000-10276200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr11:10254400-10277400 Weak transcription Primary monocytes fromperipheralblood blood
10 chr11:10254600-10265800 Weak transcription Fetal Lung lung
11 chr11:10254600-10268800 Weak transcription Primary hematopoietic stem cells short term culture blood
12 chr11:10255600-10261600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr11:10255600-10261600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr11:10255600-10268400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr11:10255600-10268400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr11:10255600-10268400 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr11:10255600-10277200 Weak transcription Primary hematopoietic stem cells blood
18 chr11:10255600-10279000 Weak transcription Small Intestine intestine
19 chr11:10255800-10266200 Weak transcription Osteobl bone
20 chr11:10255800-10268400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr11:10255800-10277400 Weak transcription HSMM muscle
22 chr11:10256000-10261600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr11:10256000-10265600 Weak transcription Muscle Satellite Cultured Cells --
24 chr11:10256000-10270800 Weak transcription NH-A brain
25 chr11:10256200-10262000 Weak transcription NHDF-Ad bronchial
26 chr11:10256400-10268400 Weak transcription NHLF lung
27 chr11:10256600-10263400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr11:10256600-10269600 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr11:10256800-10261800 Weak transcription NHEK skin
30 chr11:10257200-10261400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr11:10257800-10261200 Weak transcription ES-I3 Cell Line embryonic stem cell
32 chr11:10257800-10266400 Weak transcription Fetal Stomach stomach
33 chr11:10257800-10269000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr11:10258000-10266400 Weak transcription Fetal Intestine Small intestine
35 chr11:10258200-10259000 Enhancers Hela-S3 cervix
36 chr11:10258400-10259000 Enhancers Adipose Nuclei Adipose
37 chr11:10258400-10259200 Enhancers A549 lung
38 chr11:10258600-10259000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
39 chr11:10258800-10259000 Enhancers Left Ventricle heart
40 chr11:10258800-10259000 Enhancers Right Ventricle heart
41 chr11:10258800-10261400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015