Variant report

Variant	rs549824941
Chromosome Location	chr15:83603007-83603008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83595241..83598969-chr15:83601777..83604663,4	MCF-7	breast:
2	chr15:83602779..83607624-chr15:83619045..83622811,4	MCF-7	breast:
3	chr15:83602880..83604830-chr15:83654693..83657614,2	MCF-7	breast:
4	chr15:83596164..83597844-chr15:83602191..83603903,2	MCF-7	breast:
5	chr15:83601981..83604800-chr15:83605972..83608317,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103942	Chromatin interaction
ENSG00000169612	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv12334	chr15:83602318-83604788	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83586600-83619400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:83588800-83611600	Weak transcription	Right Atrium	heart
3	chr15:83589600-83605400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:83592600-83610600	Weak transcription	Liver	Liver
5	chr15:83593600-83604800	Weak transcription	Psoas Muscle	Psoas
6	chr15:83598600-83608600	Enhancers	Pancreas	Pancrea
7	chr15:83599600-83606200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:83600200-83606000	Weak transcription	Right Ventricle	heart
9	chr15:83600800-83603400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:83602000-83608200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr15:83602600-83603400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr15:83602600-83603400	Enhancers	HSMM	muscle
13	chr15:83602600-83604200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:83602600-83605400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:83602600-83607600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr15:83602800-83603200	Enhancers	Fetal Muscle Trunk	muscle
17	chr15:83602800-83603600	Enhancers	Brain Angular Gyrus	brain
18	chr15:83602800-83604200	Enhancers	Esophagus	oesophagus
19	chr15:83602800-83605800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:83602800-83607000	Enhancers	Gastric	stomach
21	chr15:83603000-83603600	Flanking Active TSS	Spleen	Spleen
22	chr15:83603000-83605600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:83603000-83606000	Enhancers	HSMMtube	muscle

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