Variant report

Variant	rs549855687
Chromosome Location	chrX:55513107-55513108
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:55477578..55479496-chrX:55512126..55514643,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266328	Chromatin interaction
ENSG00000187601	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410436	chrX:55229677-55671986	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv3494957	chrX:55328700-55585199	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3494958	chrX:55328757-55585154	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv469510	chrX:55463837-55570914	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv482619	chrX:55463837-55570914	Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv524155	chrX:55508099-55689174	Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55511000-55513400	Weak transcription	Brain Hippocampus Middle	brain
2	chrX:55511600-55513200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chrX:55511800-55513400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chrX:55512000-55513600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chrX:55512200-55514600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chrX:55512200-55514600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chrX:55512600-55513600	Weak transcription	Dnd41	blood
8	chrX:55512600-55514600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chrX:55512800-55513400	Active TSS	Brain Angular Gyrus	brain
10	chrX:55512800-55514200	Enhancers	K562	blood
11	chrX:55512800-55514600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chrX:55512800-55514600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chrX:55512800-55515000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chrX:55513000-55513200	Bivalent Enhancer	Fetal Kidney	kidney
15	chrX:55513000-55513600	Enhancers	Brain Anterior Caudate	brain
16	chrX:55513000-55514000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chrX:55513000-55514200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chrX:55513000-55514200	Enhancers	Fetal Heart	heart
19	chrX:55513000-55514400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chrX:55513000-55514400	Enhancers	Brain Cingulate Gyrus	brain
21	chrX:55513000-55514600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chrX:55513000-55514600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chrX:55513000-55514600	Weak transcription	Aorta	Aorta
24	chrX:55513000-55514600	Enhancers	Brain Inferior Temporal Lobe	brain

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