Variant report

Variant	rs549866510
Chromosome Location	chr15:72100783-72100784
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72097461..72102477-chr15:72104726..72109263,4	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv827383	chr15:72100044-72107239	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72096000-72105600	Enhancers	Fetal Muscle Leg	muscle
2	chr15:72096200-72103400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:72098400-72100800	Enhancers	Placenta	Placenta
4	chr15:72098600-72100800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:72098600-72100800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr15:72098600-72101400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr15:72098600-72104000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:72098800-72100800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:72098800-72101000	Enhancers	HSMM	muscle
10	chr15:72098800-72101200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:72098800-72101400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:72099000-72100800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:72099000-72100800	Enhancers	HSMMtube	muscle
14	chr15:72099000-72101000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:72099000-72101200	Enhancers	Right Atrium	heart
16	chr15:72099200-72102600	Weak transcription	Fetal Intestine Large	intestine
17	chr15:72099400-72101000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr15:72100000-72100800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr15:72100000-72101000	Weak transcription	Brain Germinal Matrix	brain
20	chr15:72100000-72103400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:72100200-72100800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr15:72100400-72100800	Flanking Active TSS	Fetal Heart	heart
23	chr15:72100400-72101200	Enhancers	Right Ventricle	heart
24	chr15:72100400-72112000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr15:72100600-72100800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:72100600-72100800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:72100600-72100800	Bivalent Enhancer	Osteobl	bone
28	chr15:72100600-72101000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr15:72100600-72101000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr15:72100600-72103000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:72100600-72103200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr15:72100600-72104000	Weak transcription	Spleen	Spleen
33	chr15:72100600-72104400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr15:72100600-72104800	Weak transcription	Lung	lung
35	chr15:72100600-72111000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr15:72100600-72113800	Weak transcription	Fetal Lung	lung

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