Variant report

Variant	rs549881178
Chromosome Location	chr3:159493481-159493482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:159492066..159493625-chr3:159498204..159501036,2	MCF-7	breast:
2	chr3:159481784..159484583-chr3:159491233..159495537,4	MCF-7	breast:
3	chr3:159481683..159485733-chr3:159491404..159494052,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250588	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4084	chr3:159492488-159513251	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159484000-159494600	Weak transcription	Psoas Muscle	Psoas
2	chr3:159484200-159501200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:159484400-159505400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:159484600-159500400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:159486800-159494000	Weak transcription	Fetal Heart	heart
6	chr3:159488400-159494600	Weak transcription	Spleen	Spleen
7	chr3:159490200-159501400	Weak transcription	Aorta	Aorta
8	chr3:159491000-159495200	Enhancers	Brain Cingulate Gyrus	brain
9	chr3:159491000-159495200	Enhancers	Colon Smooth Muscle	Colon
10	chr3:159491000-159495200	Enhancers	Rectal Smooth Muscle	rectum
11	chr3:159491000-159495200	Enhancers	HUVEC	blood vessel
12	chr3:159492200-159495000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:159492400-159493800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:159492400-159495200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr3:159492600-159493800	Enhancers	A549	lung
16	chr3:159492600-159494400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr3:159492600-159495000	Enhancers	Osteobl	bone
18	chr3:159492800-159493600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:159492800-159493600	Enhancers	Stomach Mucosa	stomach
20	chr3:159492800-159494600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:159492800-159494800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr3:159492800-159494800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:159492800-159494800	Enhancers	NHDF-Ad	bronchial
24	chr3:159492800-159495200	Enhancers	HSMM	muscle
25	chr3:159493000-159493600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:159493000-159493600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:159493000-159493600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:159493000-159493600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr3:159493000-159493600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:159493000-159493600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr3:159493000-159493600	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr3:159493000-159493600	Enhancers	Esophagus	oesophagus
33	chr3:159493000-159493600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
34	chr3:159493000-159493600	Enhancers	Fetal Muscle Trunk	muscle
35	chr3:159493000-159493600	Enhancers	Fetal Muscle Leg	muscle
36	chr3:159493000-159493600	Enhancers	Right Atrium	heart
37	chr3:159493000-159493600	Enhancers	Right Ventricle	heart
38	chr3:159493000-159493600	Genic enhancers	NHLF	lung
39	chr3:159493000-159493800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:159493000-159493800	Flanking Active TSS	Brain Anterior Caudate	brain
41	chr3:159493000-159493800	Enhancers	HMEC	breast
42	chr3:159493000-159493800	Enhancers	NHEK	skin
43	chr3:159493000-159494000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:159493000-159494000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:159493000-159494000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:159493000-159494000	Enhancers	Fetal Kidney	kidney
47	chr3:159493000-159494200	Enhancers	Hela-S3	cervix
48	chr3:159493000-159494800	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr3:159493000-159494800	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr3:159493000-159494800	Enhancers	Skeletal Muscle Male	skeletal muscle

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