Variant report

Variant	rs549882620
Chromosome Location	chr3:81534784-81534785
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1012133	chr3:81499082-81817471	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv933259	chr3:81523854-81730617	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv999587	chr3:81534364-81707800	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv536603	chr3:81534364-81707800	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81532400-81536800	Weak transcription	Right Atrium	heart
2	chr3:81532600-81540000	Weak transcription	Left Ventricle	heart
3	chr3:81532600-81540000	Weak transcription	Right Ventricle	heart
4	chr3:81533400-81535400	Enhancers	Fetal Lung	lung
5	chr3:81533600-81534800	Enhancers	Rectal Smooth Muscle	rectum
6	chr3:81533600-81534800	Enhancers	GM12878-XiMat	blood
7	chr3:81533600-81535000	Enhancers	Fetal Heart	heart
8	chr3:81533800-81534800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:81533800-81535000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:81533800-81535200	Enhancers	Psoas Muscle	Psoas
11	chr3:81533800-81535400	Enhancers	Colon Smooth Muscle	Colon
12	chr3:81533800-81535400	Enhancers	Osteobl	bone
13	chr3:81534000-81534800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:81534000-81534800	Weak transcription	Ovary	ovary
15	chr3:81534000-81535200	Enhancers	Colonic Mucosa	Colon
16	chr3:81534000-81535200	Enhancers	NH-A	brain
17	chr3:81534000-81535400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr3:81534000-81535400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr3:81534000-81547200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:81534200-81535400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:81534200-81535400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:81534400-81534800	Enhancers	HUVEC	blood vessel
23	chr3:81534400-81534800	Enhancers	NHLF	lung
24	chr3:81534400-81535000	Enhancers	HSMM	muscle
25	chr3:81534400-81535200	Enhancers	NHEK	skin
26	chr3:81534400-81535400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:81534600-81534800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
28	chr3:81534600-81534800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr3:81534600-81535000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:81534600-81535000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:81534600-81535000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:81534600-81535000	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr3:81534600-81535200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:81534600-81535200	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr3:81534600-81535200	Active TSS	Aorta	Aorta
36	chr3:81534600-81535200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr3:81534600-81535400	Enhancers	Duodenum Mucosa	Duodenum
38	chr3:81534600-81535400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr3:81534600-81535400	Flanking Active TSS	NHDF-Ad	bronchial
40	chr3:81534600-81539000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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