Variant report

Variant	rs549894494
Chromosome Location	chr7:101333946-101333947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101332498..101335096-chr7:101338388..101341217,2	MCF-7	breast:
2	chr7:101332096..101334015-chr7:101646286..101648242,2	MCF-7	breast:
3	chr7:101329586..101337237-chr7:101456658..101461622,22	MCF-7	breast:
4	chr7:101330039..101336974-chr7:101455968..101461022,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv511984	chr7:101332885-101335376	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3516908	chr7:101333317-101335769	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2458495	chr7:101333616-101335344	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv5647	chr7:101333939-101334690	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101331400-101334000	Enhancers	Fetal Intestine Small	intestine
2	chr7:101332000-101334000	Enhancers	Duodenum Mucosa	Duodenum
3	chr7:101332000-101334000	Enhancers	Fetal Intestine Large	intestine
4	chr7:101332000-101376800	Weak transcription	Right Atrium	heart
5	chr7:101332200-101335000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:101332200-101335200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:101332200-101335200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr7:101332200-101335200	Weak transcription	Pancreas	Pancrea
9	chr7:101332200-101335200	Weak transcription	Thymus	Thymus
10	chr7:101332200-101335400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:101332200-101335400	Weak transcription	Fetal Thymus	thymus
12	chr7:101332400-101334600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:101332400-101334600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr7:101332400-101335000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr7:101332400-101335200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr7:101332400-101335200	Weak transcription	A549	lung
17	chr7:101332400-101335200	Weak transcription	GM12878-XiMat	blood
18	chr7:101332600-101334000	Bivalent Enhancer	HepG2	liver
19	chr7:101332600-101335200	Weak transcription	Liver	Liver
20	chr7:101332600-101335600	Weak transcription	Hela-S3	cervix
21	chr7:101332600-101337000	Weak transcription	Placenta	Placenta
22	chr7:101333000-101335400	Weak transcription	Spleen	Spleen
23	chr7:101333200-101334000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:101333200-101334000	Enhancers	Fetal Heart	heart
25	chr7:101333200-101334000	Enhancers	Fetal Muscle Leg	muscle
26	chr7:101333400-101334000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr7:101333400-101334000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:101333600-101334000	Enhancers	Gastric	stomach
29	chr7:101333600-101334000	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr7:101333600-101334000	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr7:101333600-101334000	Enhancers	Stomach Mucosa	stomach
32	chr7:101333800-101334000	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr7:101333800-101335000	Weak transcription	Colonic Mucosa	Colon

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