Variant report

Variant	rs549909690
Chromosome Location	chr13:47826198-47826199
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3394678	chr13:47678184-48039379	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832599	chr13:47703075-47873855	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv561585	chr13:47808232-47839338	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv455878	chr13:47822976-47842680	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv561586	chr13:47822976-47842680	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	nsv1046560	chr13:47826023-47854425	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47823000-47827600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr13:47824800-47830400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:47825000-47826800	Weak transcription	Osteobl	bone
4	chr13:47825000-47830400	Weak transcription	NH-A	brain
5	chr13:47825400-47826200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr13:47825400-47830400	Weak transcription	NHEK	skin
7	chr13:47825600-47826400	Weak transcription	Aorta	Aorta
8	chr13:47825600-47826600	Weak transcription	NHDF-Ad	bronchial
9	chr13:47825800-47828400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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