Variant report

Variant rs549929085
Chromosome Location chr20:24450385-24450386
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:24449200-24451200 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
2 chr20:24449200-24452200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
3 chr20:24449400-24450400 Active TSS iPS DF 19.11 Cell Line embryonic stem cell
4 chr20:24449400-24451000 Bivalent/Poised TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr20:24449400-24451000 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
6 chr20:24449400-24451000 Flanking Active TSS Primary hematopoietic stem cells blood
7 chr20:24449400-24451600 Bivalent/Poised TSS Colonic Mucosa Colon
8 chr20:24449400-24452200 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
9 chr20:24449400-24452200 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
10 chr20:24449400-24452200 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr20:24449400-24452200 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr20:24449400-24452200 Active TSS Brain Angular Gyrus brain
13 chr20:24449400-24452200 Active TSS Brain Cingulate Gyrus brain
14 chr20:24449400-24452400 Bivalent/Poised TSS H1 Cell Line embryonic stem cell
15 chr20:24449400-24452400 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr20:24449400-24452400 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
17 chr20:24449600-24450600 Active TSS Colon Smooth Muscle Colon
18 chr20:24449600-24450600 Bivalent/Poised TSS Duodenum Smooth Muscle Duodenum
19 chr20:24449600-24450600 Active TSS Stomach Smooth Muscle stomach
20 chr20:24449600-24450800 Active TSS H9 Cell Line embryonic stem cell
21 chr20:24449600-24450800 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr20:24449600-24451000 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr20:24449600-24451000 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr20:24449600-24451000 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
25 chr20:24449600-24451800 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
26 chr20:24449600-24452000 Bivalent/Poised TSS Foreskin Fibroblast Primary Cells skin01 Skin
27 chr20:24449600-24452000 Active TSS Ovary ovary
28 chr20:24449600-24452200 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
29 chr20:24449600-24452200 Bivalent/Poised TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr20:24449600-24452200 Active TSS Brain Substantia Nigra brain
31 chr20:24449600-24452400 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
32 chr20:24449600-24452400 Active TSS Brain Anterior Caudate brain
33 chr20:24449800-24450400 Bivalent/Poised TSS Primary T cells from cord blood blood
34 chr20:24449800-24450600 Bivalent/Poised TSS H9 Derived Neuron Cultured Cells ES cell derived
35 chr20:24449800-24450600 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
36 chr20:24449800-24450600 Bivalent/Poised TSS Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr20:24449800-24450600 Active TSS Adipose Nuclei Adipose
38 chr20:24449800-24450600 Weak transcription Fetal Heart heart
39 chr20:24449800-24450600 Active TSS Gastric stomach
40 chr20:24449800-24450800 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr20:24449800-24450800 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
42 chr20:24449800-24450800 Active TSS NH-A brain
43 chr20:24449800-24451000 Active TSS ES-UCSF4 Cell Line embryonic stem cell
44 chr20:24449800-24451000 Active TSS Brain Hippocampus Middle brain
45 chr20:24449800-24451000 Active TSS Fetal Brain Female brain
46 chr20:24449800-24451000 Bivalent/Poised TSS Rectal Smooth Muscle rectum
47 chr20:24449800-24451200 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
48 chr20:24449800-24451200 Bivalent/Poised TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr20:24449800-24451200 Active TSS Brain Inferior Temporal Lobe brain
50 chr20:24449800-24451400 Active TSS Pancreatic Islets Pancreatic Islet

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