Variant report

Variant	rs549940938
Chromosome Location	chr1:210820980-210820981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv522480	chr1:210779936-210848344	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
3	esv1825229	chr1:210789477-210854976	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv873151	chr1:210818347-210846888	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv873152	chr1:210820285-210854815	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210795400-210822600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:210801600-210823000	Weak transcription	Aorta	Aorta
3	chr1:210815200-210827000	Weak transcription	Pancreas	Pancrea
4	chr1:210818400-210821800	Enhancers	Fetal Stomach	stomach
5	chr1:210818600-210822200	Enhancers	HepG2	liver
6	chr1:210818800-210821800	Enhancers	Fetal Muscle Leg	muscle
7	chr1:210819000-210821000	Enhancers	Ovary	ovary
8	chr1:210819000-210822000	Enhancers	Fetal Lung	lung
9	chr1:210819400-210827000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:210819400-210827200	Weak transcription	Brain Anterior Caudate	brain
11	chr1:210819600-210827200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:210819800-210823800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:210820000-210827200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:210820200-210821600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:210820400-210821600	Enhancers	HSMMtube	muscle
16	chr1:210820400-210821800	Enhancers	Dnd41	blood
17	chr1:210820400-210821800	Enhancers	HSMM	muscle
18	chr1:210820600-210821200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:210820600-210821400	Weak transcription	Fetal Brain Female	brain
20	chr1:210820600-210821800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr1:210820600-210822000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:210820600-210827000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:210820800-210821400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:210820800-210821400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr1:210820800-210821400	Enhancers	Left Ventricle	heart
26	chr1:210820800-210821400	Enhancers	Right Ventricle	heart
27	chr1:210820800-210821600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:210820800-210821600	Enhancers	Primary T cells fromperipheralblood	blood
29	chr1:210820800-210821600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:210820800-210821800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:210820800-210822000	Enhancers	NH-A	brain
32	chr1:210820800-210823000	Enhancers	Brain Germinal Matrix	brain
33	chr1:210820800-210823200	Enhancers	Fetal Brain Male	brain

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