Variant report

Variant	rs549944227
Chromosome Location	chr9:136821505-136821506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:136818593..136821583-chr9:136825689..136827854,2	MCF-7	breast:
2	chr9:136808878..136810435-chr9:136819072..136822048,2	K562	blood:
3	chr9:136819196..136821510-chr9:136837894..136840389,2	K562	blood:
4	chr9:136821303..136824220-chr9:136826571..136828241,2	MCF-7	breast:
5	chr9:136808221..136810435-chr9:136819072..136822048,3	K562	blood:
6	chr9:136815263..136820961-chr9:136821414..136825553,6	MCF-7	breast:
7	chr9:136819142..136821965-chr9:136822895..136826242,3	K562	blood:
8	chr9:136737400..136743457-chr9:136819359..136829756,12	MCF-7	breast:
9	chr9:136729161..136730927-chr9:136820243..136822364,2	MCF-7	breast:

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv1046310	chr9:136762829-136872226	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv894130	chr9:136767346-136906752	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv831748	chr9:136788484-136944326	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv894131	chr9:136792765-136906752	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv466626	chr9:136807770-136835343	Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv615742	chr9:136807770-136835343	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv831749	chr9:136809200-136915764	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	nsv894132	chr9:136813341-136950691	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
13	nsv982642	chr9:136819005-136837069	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv2761297	chr9:136819288-136825744	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3400405	chr9:136819556-136822104	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3357357	chr9:136819706-136822004	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3422327	chr9:136820181-136821529	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136811800-136821600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:136812200-136821800	Weak transcription	Hela-S3	cervix
3	chr9:136817000-136824400	Weak transcription	HepG2	liver
4	chr9:136818200-136823200	Enhancers	Spleen	Spleen
5	chr9:136818600-136823200	Enhancers	Fetal Muscle Leg	muscle
6	chr9:136819000-136822000	Enhancers	HSMMtube	muscle
7	chr9:136819000-136822600	Enhancers	Fetal Brain Male	brain
8	chr9:136819000-136822800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr9:136819000-136822800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:136819000-136823200	Enhancers	Fetal Thymus	thymus
11	chr9:136819000-136823200	Enhancers	Lung	lung
12	chr9:136819400-136822400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr9:136819400-136823000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:136819400-136823000	Enhancers	Fetal Brain Female	brain
15	chr9:136819400-136823200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr9:136819400-136823200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr9:136819400-136823200	Enhancers	Placenta	Placenta
18	chr9:136819600-136822800	Enhancers	Right Ventricle	heart
19	chr9:136819800-136822600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:136819800-136822800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:136819800-136822800	Enhancers	Liver	Liver
22	chr9:136819800-136823200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr9:136819800-136823200	Enhancers	Fetal Muscle Trunk	muscle
24	chr9:136819800-136823200	Enhancers	Pancreas	Pancrea
25	chr9:136820000-136822600	Enhancers	Fetal Intestine Large	intestine
26	chr9:136820400-136821600	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr9:136820600-136821600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr9:136820600-136822000	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr9:136820800-136822400	Enhancers	Brain Angular Gyrus	brain
30	chr9:136820800-136822800	Enhancers	Brain Germinal Matrix	brain
31	chr9:136820800-136822800	Enhancers	Stomach Mucosa	stomach
32	chr9:136820800-136823000	Enhancers	Left Ventricle	heart
33	chr9:136820800-136823200	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr9:136821000-136821600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:136821000-136821600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr9:136821000-136821600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:136821000-136821600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
38	chr9:136821000-136821600	Flanking Active TSS	Primary hematopoietic stem cells	blood
39	chr9:136821000-136821600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:136821000-136821600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
41	chr9:136821000-136821600	Active TSS	Rectal Smooth Muscle	rectum
42	chr9:136821000-136821600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
43	chr9:136821000-136821800	Flanking Active TSS	Primary B cells from cord blood	blood
44	chr9:136821000-136821800	Bivalent Enhancer	Brain Hippocampus Middle	brain
45	chr9:136821000-136821800	Flanking Active TSS	HUVEC	blood vessel
46	chr9:136821000-136822000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr9:136821000-136822000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:136821000-136822000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr9:136821000-136822000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr9:136821000-136822000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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