Variant report

Variant	rs549952942
Chromosome Location	chr11:119488811-119488812
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv898419	chr11:119488646-119518006	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv898420	chr11:119488646-119541332	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119485200-119489600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:119485400-119489800	Enhancers	HUVEC	blood vessel
3	chr11:119485400-119490400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:119485600-119489000	Enhancers	Adipose Nuclei	Adipose
5	chr11:119485800-119489000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:119485800-119489200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:119485800-119489400	Enhancers	NH-A	brain
8	chr11:119486200-119489200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr11:119486400-119489000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:119486600-119489200	Enhancers	Placenta	Placenta
11	chr11:119486800-119489000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:119486800-119489200	Enhancers	Fetal Muscle Leg	muscle
13	chr11:119486800-119489400	Enhancers	HepG2	liver
14	chr11:119487000-119489200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:119487200-119489000	Weak transcription	Stomach Mucosa	stomach
16	chr11:119487600-119489800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:119487800-119489000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:119487800-119489000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:119487800-119489200	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr11:119487800-119489800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:119488000-119489000	Flanking Active TSS	Brain Angular Gyrus	brain
22	chr11:119488000-119489000	Flanking Active TSS	Brain Cingulate Gyrus	brain
23	chr11:119488000-119489200	Bivalent Enhancer	Fetal Lung	lung
24	chr11:119488000-119489400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:119488000-119489400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr11:119488000-119489600	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr11:119488000-119489600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:119488200-119489000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:119488200-119489000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:119488200-119489000	Enhancers	Brain Germinal Matrix	brain
31	chr11:119488200-119489000	Flanking Active TSS	Brain Substantia Nigra	brain
32	chr11:119488200-119489400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
33	chr11:119488200-119489400	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr11:119488400-119489000	Flanking Active TSS	Brain Anterior Caudate	brain
35	chr11:119488400-119489400	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr11:119488400-119489600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr11:119488600-119489000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr11:119488600-119489000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:119488600-119494600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:119488800-119489000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr11:119488800-119489000	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr11:119488800-119489200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr11:119488800-119489200	Weak transcription	Right Atrium	heart
44	chr11:119488800-119489400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:119488800-119494600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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