Variant report

Variant	rs549979541
Chromosome Location	chr9:115819511-115819512
allele	-/CTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr9:115818081-115819591	Hela-S3	cervix:	n/a	n/a
2	HNF4A	chr9:115819498-115819796	HepG2	liver:	n/a	chr9:115819704-115819719
3	POLR2A	chr9:115818367-115819546	U87	brain:	n/a	n/a
4	POLR2A	chr9:115818621-115819536	HepG2	liver:	n/a	n/a
5	REST	chr9:115818028-115819714	H1-neurons	neurons:	n/a	chr9:115819648-115819668 chr9:115819648-115819668
6	HNF4A	chr9:115819464-115819856	HepG2	liver:	n/a	chr9:115819704-115819719
7	HNF4G	chr9:115819502-115819842	HepG2	liver:	n/a	chr9:115819703-115819718
8	GABPA	chr9:115818708-115819565	A549	lung:	n/a	n/a
9	YY1	chr9:115818412-115819619	SK-N-SH	brain:	n/a	chr9:115819041-115819061 chr9:115819047-115819055 chr9:115819014-115819023 chr9:115819045-115819053 chr9:115819044-115819054 chr9:115819044-115819066
10	ELF1	chr9:115818731-115819522	SK-N-SH	brain:	n/a	chr9:115819070-115819083
11	HNF4G	chr9:115819485-115819957	HepG2	liver:	n/a	chr9:115819703-115819718

Variant related genes	Relation type
ZFP37	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1047000	chr9:115610445-115884038	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv831691	chr9:115754699-115929459	Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1048246	chr9:115759281-115821188	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv540198	chr9:115759281-115821188	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1039564	chr9:115769553-115821327	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv540199	chr9:115769553-115821327	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv1042280	chr9:115769753-115821188	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv540200	chr9:115769753-115821188	ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv1037784	chr9:115777096-115820554	ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
12	esv2764155	chr9:115777108-115820566	Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv508563	chr9:115800632-115855728	Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
14	nsv6672	chr9:115811030-115856455	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv825051	chr9:115811606-115882022	ZNF genes & repeats Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv825052	chr9:115811634-115882048	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv525545	chr9:115814473-115862852	ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv466492	chr9:115814473-115866273	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv615205	chr9:115814473-115866273	Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv466493	chr9:115815398-115867276	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv615206	chr9:115815398-115867276	ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv893734	chr9:115815398-115891009	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
23	esv2757353	chr9:115815398-115892245	ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
24	nsv8562	chr9:115818667-115854598	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115793000-115822200	ZNF genes & repeats	Liver	Liver
2	chr9:115799600-115820400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr9:115817400-115819600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr9:115817600-115819600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:115817600-115822400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
6	chr9:115817800-115819600	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr9:115817800-115819600	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr9:115817800-115819800	Active TSS	Fetal Brain Female	brain
9	chr9:115817800-115819800	ZNF genes & repeats	GM12878-XiMat	blood
10	chr9:115817800-115820000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:115817800-115820000	Active TSS	NHLF	lung
12	chr9:115817800-115820200	Active TSS	Right Atrium	heart
13	chr9:115817800-115822400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr9:115818000-115819600	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr9:115818000-115819600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:115818000-115819600	Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr9:115818000-115819600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:115818000-115819600	Active TSS	Brain Angular Gyrus	brain
19	chr9:115818000-115819600	Active TSS	Fetal Kidney	kidney
20	chr9:115818000-115819600	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr9:115818000-115819600	Active TSS	HSMM	muscle
22	chr9:115818000-115819600	Active TSS	NHDF-Ad	bronchial
23	chr9:115818000-115819800	Active TSS	Muscle Satellite Cultured Cells	--
24	chr9:115818000-115819800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:115818000-115819800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
26	chr9:115818000-115819800	ZNF genes & repeats	Fetal Intestine Large	intestine
27	chr9:115818000-115819800	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr9:115818000-115819800	Active TSS	Rectal Smooth Muscle	rectum
29	chr9:115818000-115819800	Active TSS	Osteobl	bone
30	chr9:115818200-115819600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:115818200-115819600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
32	chr9:115818200-115819600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:115818200-115819600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
34	chr9:115818200-115819600	Active TSS	Colonic Mucosa	Colon
35	chr9:115818200-115819600	Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr9:115818200-115819600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
37	chr9:115818200-115819600	Active TSS	Fetal Muscle Trunk	muscle
38	chr9:115818200-115819600	Active TSS	Ovary	ovary
39	chr9:115818200-115819600	Active TSS	A549	lung
40	chr9:115818200-115819600	Active TSS	HMEC	breast
41	chr9:115818200-115819800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr9:115818200-115819800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:115818200-115819800	Active TSS	Psoas Muscle	Psoas
44	chr9:115818200-115819800	Active TSS	NH-A	brain
45	chr9:115818200-115822600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
46	chr9:115818400-115819600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr9:115818400-115819600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
48	chr9:115818400-115819600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr9:115818400-115819600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
50	chr9:115818400-115819600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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