Variant report

Variant	rs549993298
Chromosome Location	chr9:102485081-102485082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102482457..102484656-chr9:102484731..102487139,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893621	chr9:102342950-102585545	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv3426604	chr9:102483131-102485179	Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102481800-102488200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:102483000-102489800	Weak transcription	Aorta	Aorta
3	chr9:102483200-102485200	Weak transcription	Thymus	Thymus
4	chr9:102483200-102485800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr9:102483200-102489000	Weak transcription	Right Atrium	heart
6	chr9:102483600-102485200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr9:102484200-102485800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:102484200-102486000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:102484600-102485600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:102484600-102485600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr9:102484600-102485800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr9:102484600-102485800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr9:102484600-102485800	Enhancers	Primary T cells from cord blood	blood
14	chr9:102484600-102486000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:102484600-102486200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr9:102484600-102486200	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr9:102484800-102485800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:102484800-102485800	Enhancers	Primary B cells from peripheral blood	blood
19	chr9:102484800-102485800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr9:102484800-102486200	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr9:102485000-102485400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr9:102485000-102485600	Weak transcription	Primary B cells from cord blood	blood
23	chr9:102485000-102485600	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr9:102485000-102485600	Enhancers	Dnd41	blood
25	chr9:102485000-102485600	Enhancers	GM12878-XiMat	blood
26	chr9:102485000-102485800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:102485000-102485800	Enhancers	Primary T cells fromperipheralblood	blood
28	chr9:102485000-102485800	Enhancers	Primary hematopoietic stem cells	blood
29	chr9:102485000-102485800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr9:102485000-102485800	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr9:102485000-102485800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr9:102485000-102485800	Enhancers	Fetal Thymus	thymus
33	chr9:102485000-102486000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr9:102485000-102486200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr9:102485000-102486200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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