The 2.0 version of rSNPBase

Variant report

Variant rs550029807
Chromosome Location chr5:180217294-180217295
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:180210000-180217800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr5:180210200-180217400 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr5:180211200-180217400 Weak transcription K562 blood
4 chr5:180212400-180225400 Strong transcription Thymus Thymus
5 chr5:180212800-180228600 Weak transcription Fetal Brain Male brain
6 chr5:180213000-180217600 Weak transcription Hela-S3 cervix
7 chr5:180213800-180218000 Weak transcription Primary T helper naive cells from peripheral blood blood
8 chr5:180214000-180217600 Weak transcription Small Intestine intestine
9 chr5:180214000-180219200 Genic enhancers Placenta Placenta
10 chr5:180214000-180221000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr5:180214200-180219000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr5:180214400-180220800 Strong transcription Fetal Intestine Small intestine
13 chr5:180214400-180222600 Weak transcription Right Atrium heart
14 chr5:180214400-180222800 Weak transcription Stomach Mucosa stomach
15 chr5:180214400-180223000 Strong transcription Primary neutrophils fromperipheralblood blood
16 chr5:180214400-180224400 Strong transcription Monocytes-CD14+_RO01746 blood
17 chr5:180214600-180217600 Strong transcription Primary T helper cells fromperipheralblood blood
18 chr5:180214600-180217600 Weak transcription NHEK skin
19 chr5:180214600-180221000 Strong transcription Primary T regulatory cells fromperipheralblood blood
20 chr5:180214600-180223000 Strong transcription Primary monocytes fromperipheralblood blood
21 chr5:180214600-180223400 Strong transcription Fetal Thymus thymus
22 chr5:180214600-180224600 Weak transcription ES-I3 Cell Line embryonic stem cell
23 chr5:180214600-180227000 Weak transcription Fetal Kidney kidney
24 chr5:180214800-180220000 Strong transcription GM12878-XiMat blood
25 chr5:180214800-180220400 Genic enhancers Adipose Nuclei Adipose
26 chr5:180214800-180220600 Strong transcription Brain Germinal Matrix brain
27 chr5:180214800-180220600 Strong transcription Dnd41 blood
28 chr5:180214800-180220800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr5:180214800-180222000 Strong transcription Rectal Mucosa Donor 31 rectum
30 chr5:180214800-180226400 Weak transcription ES-WA7 Cell Line embryonic stem cell
31 chr5:180215000-180217400 Weak transcription Brain Angular Gyrus brain
32 chr5:180215000-180217400 Weak transcription Rectal Smooth Muscle rectum
33 chr5:180215000-180218400 Weak transcription H9 Cell Line embryonic stem cell
34 chr5:180215000-180218800 Strong transcription Fetal Intestine Large intestine
35 chr5:180215000-180219600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr5:180215000-180220000 Strong transcription Primary B cells from peripheral blood blood
37 chr5:180215000-180220200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
38 chr5:180215000-180220400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr5:180215000-180220600 Strong transcription Primary T cells from cord blood blood
40 chr5:180215000-180220600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
41 chr5:180215000-180220800 Strong transcription Sigmoid Colon Sigmoid Colon
42 chr5:180215000-180223600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr5:180215200-180218000 Weak transcription Brain Inferior Temporal Lobe brain
44 chr5:180215200-180220200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr5:180215200-180220200 Strong transcription Duodenum Mucosa Duodenum
46 chr5:180215200-180222400 Strong transcription Stomach Smooth Muscle stomach
47 chr5:180215200-180222800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr5:180215200-180223000 Strong transcription Primary hematopoietic stem cells short term culture blood
49 chr5:180215200-180224000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr5:180215400-180217800 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015