Variant report

Variant	rs550048831
Chromosome Location	chr13:67873416-67873417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv562141	chr13:67842588-67878422	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2763033	chr13:67853794-68042797	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1046032	chr13:67853794-68056887	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv527729	chr13:67854436-68047717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1047135	chr13:67857898-68044958	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3434233	chr13:67872454-68265687	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67870800-67874600	Enhancers	HSMM	muscle
2	chr13:67871000-67873800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr13:67872600-67873600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:67872600-67873800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:67872800-67874400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:67873200-67873600	Enhancers	HSMMtube	muscle
7	chr13:67873200-67873600	Enhancers	NH-A	brain
8	chr13:67873200-67873800	Enhancers	Brain Substantia Nigra	brain
9	chr13:67873200-67873800	Enhancers	HUVEC	blood vessel
10	chr13:67873200-67874200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:67873200-67874200	Enhancers	NHDF-Ad	bronchial
12	chr13:67873200-67874200	Flanking Active TSS	Osteobl	bone
13	chr13:67873200-67874400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:67873200-67874600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr13:67873200-67874600	Enhancers	HMEC	breast
16	chr13:67873400-67873600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr13:67873400-67873600	Enhancers	Brain Cingulate Gyrus	brain
18	chr13:67873400-67873800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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