Variant report

Variant	rs550066745
Chromosome Location	chr5:74535100-74535101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr5:74535043-74536091	ECC-1	luminal epithelium:	n/a	n/a
2	MAX	chr5:74535020-74535920	ECC-1	luminal epithelium:	n/a	chr5:74535488-74535497

Variant related genes	Relation type
ANKRD31	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2758000	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759350	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv882190	chr5:74463185-74554826	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv882191	chr5:74478078-74554826	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3445432	chr5:74533996-74535994	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74533200-74535200	Weak transcription	Pancreas	Pancrea
2	chr5:74533400-74535200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:74533400-74535200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:74533400-74535200	Weak transcription	NH-A	brain
5	chr5:74533400-74535400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:74533400-74535400	Weak transcription	A549	lung
7	chr5:74533400-74537400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:74533800-74537800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:74534000-74536000	Weak transcription	Esophagus	oesophagus
10	chr5:74534200-74535600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr5:74534200-74536200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:74534400-74535400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr5:74534400-74535400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:74534400-74535400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:74534400-74535800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr5:74534400-74536400	Enhancers	HMEC	breast
17	chr5:74535000-74535200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr5:74535000-74535400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr5:74535000-74535400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:74535000-74535600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr5:74535000-74535600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr5:74535000-74536000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr5:74535000-74536200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr5:74535000-74536200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr5:74535000-74536400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:74535000-74536400	Enhancers	Placenta	Placenta
27	chr5:74535000-74536400	Enhancers	NHEK	skin
28	chr5:74535000-74538000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr5:74535000-74540200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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