Variant report

Variant	rs550100452
Chromosome Location	chr15:72017052-72017053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3444830	chr15:72015923-72018646	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2425447	chr15:72016065-72017807	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv512405	chr15:72016185-72017926	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv17697	chr15:72016482-72017489	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3311410	chr15:72016948-72018146	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv8355	chr15:72017012-72017800	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3405366	chr15:72017045-72017752	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72000800-72023400	Weak transcription	Fetal Intestine Small	intestine
2	chr15:72002400-72022600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:72002600-72022600	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:72003200-72018000	Weak transcription	Ovary	ovary
5	chr15:72005800-72024600	Weak transcription	Left Ventricle	heart
6	chr15:72009200-72030000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:72009800-72020800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:72010000-72017600	Weak transcription	NHLF	lung
9	chr15:72010200-72020800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:72010200-72023400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:72017000-72017200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:72017000-72018000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:72017000-72018000	Enhancers	NHEK	skin
14	chr15:72017000-72018200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:72017000-72018200	Enhancers	A549	lung
16	chr15:72017000-72018800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:72017000-72018800	Enhancers	Hela-S3	cervix
18	chr15:72017000-72048800	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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