Variant report

Variant	rs550101299
Chromosome Location	chr16:69854941-69854942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69848424..69850083-chr16:69853504..69855055,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	esv3314058	chr16:69854194-69858940	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1062171	chr16:69854267-70188585	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv542941	chr16:69854267-70188585	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
5	esv3314059	chr16:69854332-69858806	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1059249	chr16:69854467-70188446	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
7	nsv542942	chr16:69854467-70188446	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
8	esv3385130	chr16:69854678-69858994	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69823800-69874800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr16:69830200-69856600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr16:69830600-69857600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr16:69830600-69864200	Weak transcription	Colon Smooth Muscle	Colon
5	chr16:69830600-69867000	Weak transcription	Right Ventricle	heart
6	chr16:69831000-69856400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr16:69832400-69858400	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr16:69833800-69857600	Weak transcription	Small Intestine	intestine
9	chr16:69833800-69864400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr16:69833800-69874600	Weak transcription	Dnd41	blood
11	chr16:69833800-69875600	Weak transcription	NHEK	skin
12	chr16:69834000-69855000	Weak transcription	Brain Germinal Matrix	brain
13	chr16:69834000-69910600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr16:69834200-69857800	Weak transcription	Left Ventricle	heart
15	chr16:69834200-69892200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr16:69836400-69867400	Weak transcription	Colonic Mucosa	Colon
17	chr16:69836800-69864200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr16:69836800-69864400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr16:69837000-69905600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr16:69837800-69864600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr16:69838600-69873000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr16:69838800-69864400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr16:69838800-69874400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr16:69842000-69857200	Weak transcription	GM12878-XiMat	blood
25	chr16:69844200-69855000	Weak transcription	Right Atrium	heart
26	chr16:69844200-69855400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr16:69844200-69863000	Weak transcription	Esophagus	oesophagus
28	chr16:69846600-69874400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr16:69846600-69875200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr16:69848400-69855000	Weak transcription	Placenta	Placenta
31	chr16:69848800-69862800	Weak transcription	Fetal Thymus	thymus
32	chr16:69849600-69857000	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr16:69851400-69855000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr16:69851800-69855200	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr16:69851800-69855600	Strong transcription	Primary B cells from peripheral blood	blood
36	chr16:69851800-69857600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr16:69852000-69855000	Strong transcription	Fetal Stomach	stomach
38	chr16:69852000-69856400	Strong transcription	Primary T cells from cord blood	blood
39	chr16:69852000-69862200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr16:69852000-69864200	Strong transcription	Fetal Intestine Small	intestine
41	chr16:69852000-69893200	Weak transcription	K562	blood
42	chr16:69852600-69857600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr16:69853000-69867600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr16:69853200-69855000	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr16:69853200-69856000	Weak transcription	Liver	Liver
46	chr16:69853200-69857200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr16:69853200-69857800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr16:69853200-69864600	Weak transcription	Spleen	Spleen
49	chr16:69853200-69864800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr16:69853200-69867200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links