Variant report

Variant	rs550117658
Chromosome Location	chr15:72667446-72667447
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72666924..72668810-chr17:56735242..56736980,2	MCF-7	breast:
2	chr15:72650512..72652405-chr15:72665607..72667984,2	K562	blood:
3	chr15:72666408..72669827-chr15:72764535..72767754,3	MCF-7	breast:
4	chr15:72667344..72672450-chr15:72764755..72768100,8	K562	blood:
5	chr15:72666558..72670735-chr15:72765041..72769475,12	MCF-7	breast:
6	chr15:72660052..72661960-chr15:72663740..72668025,4	MCF-7	breast:
7	chr15:72667335..72670021-chr15:72670916..72672752,3	MCF-7	breast:
8	chr15:72561194..72564093-chr15:72666798..72669351,2	MCF-7	breast:
9	chr15:72518920..72521207-chr15:72667359..72669171,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000166233	Chromatin interaction
ENSG00000261423	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000243007	Chromatin interaction
ENSG00000137817	Chromatin interaction
ENSG00000067225	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv521971	chr15:72666424-72678738	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72613400-72667600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:72648400-72667600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:72649000-72667600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:72649200-72667600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:72651600-72667800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:72661600-72667800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr15:72663400-72667800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:72663800-72667600	Weak transcription	Aorta	Aorta
9	chr15:72664400-72667600	Weak transcription	Ovary	ovary
10	chr15:72664800-72667600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr15:72665400-72667600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:72665800-72667600	Enhancers	Primary T cells from cord blood	blood
13	chr15:72665800-72667600	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr15:72666200-72667600	Enhancers	Fetal Brain Male	brain
15	chr15:72666200-72669000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:72666400-72667600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr15:72666400-72668600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:72666400-72669000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:72666600-72667600	Enhancers	Primary B cells from peripheral blood	blood
20	chr15:72666600-72667600	Enhancers	Primary hematopoietic stem cells	blood
21	chr15:72666600-72667600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:72666600-72667600	Enhancers	Gastric	stomach
23	chr15:72666600-72667800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:72666600-72668000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr15:72666600-72669000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:72666600-72669000	Active TSS	Fetal Intestine Small	intestine
27	chr15:72666600-72669200	Active TSS	Fetal Intestine Large	intestine
28	chr15:72666600-72669400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:72666800-72667600	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr15:72666800-72667600	Enhancers	Fetal Heart	heart
31	chr15:72666800-72667800	Flanking Active TSS	Dnd41	blood
32	chr15:72666800-72668000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:72666800-72669400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr15:72667000-72667600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr15:72667000-72667600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:72667000-72667600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr15:72667000-72667600	Enhancers	Fetal Lung	lung
38	chr15:72667000-72667600	Flanking Active TSS	Psoas Muscle	Psoas
39	chr15:72667000-72667600	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr15:72667000-72667600	Enhancers	Thymus	Thymus
41	chr15:72667000-72667800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:72667000-72667800	Flanking Active TSS	Brain Germinal Matrix	brain
43	chr15:72667000-72668000	Flanking Active TSS	Liver	Liver
44	chr15:72667000-72668000	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr15:72667000-72668000	Active TSS	Right Atrium	heart
46	chr15:72667000-72668000	Flanking Active TSS	NHEK	skin
47	chr15:72667000-72668200	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr15:72667000-72668800	Active TSS	Colonic Mucosa	Colon
49	chr15:72667000-72669000	Active TSS	NHDF-Ad	bronchial
50	chr15:72667000-72669200	Active TSS	HUES48 Cell Line	embryonic stem cell

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