Variant report

Variant	rs550121206
Chromosome Location	chr2:10328415-10328416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:10302901..10305330-chr2:10325922..10328605,2	K562	blood:
2	chr2:10328066..10328890-chr2:10443478..10444354,3	MCF-7	breast:
3	chr2:10328190..10329252-chr2:10575138..10575869,4	MCF-7	breast:
4	chr2:10326584..10329033-chr2:10441051..10443274,2	MCF-7	breast:
5	chr2:10326687..10328532-chr2:10350704..10352850,2	K562	blood:
6	chr2:10328150..10328991-chr2:10548904..10549863,5	MCF-7	breast:
7	chr2:10212496..10213272-chr2:10328166..10328691,2	K562	blood:
8	chr2:10328070..10328961-chr2:10549008..10550652,5	MCF-7	breast:
9	chr2:10328063..10328629-chr2:10575089..10575716,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115756	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873634	chr2:10275814-10337034	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
2	nsv873635	chr2:10286466-10344465	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv873636	chr2:10300390-10331919	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv3340132	chr2:10328101-10332799	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10273800-10330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:10286400-10331400	Weak transcription	Spleen	Spleen
3	chr2:10290200-10351400	Strong transcription	Dnd41	blood
4	chr2:10302400-10337600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:10304400-10339800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:10311800-10331200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:10311800-10337000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:10313000-10344400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:10314000-10340400	Weak transcription	HepG2	liver
10	chr2:10320600-10337200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:10320800-10332400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr2:10320800-10336800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:10321800-10333400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr2:10321800-10338000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:10325000-10328600	Weak transcription	Gastric	stomach
16	chr2:10325200-10328800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr2:10325400-10333000	Weak transcription	Fetal Lung	lung
18	chr2:10325600-10330000	Strong transcription	Fetal Thymus	thymus
19	chr2:10325600-10342800	Weak transcription	Fetal Brain Female	brain
20	chr2:10326600-10329800	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr2:10326600-10339400	Strong transcription	Thymus	Thymus
22	chr2:10326800-10330000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr2:10327400-10331600	Weak transcription	Fetal Intestine Small	intestine
24	chr2:10327600-10330000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:10327600-10330000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr2:10327600-10333600	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr2:10328000-10333400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr2:10328200-10336600	Weak transcription	Brain Germinal Matrix	brain
29	chr2:10328400-10329200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr2:10328400-10332600	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links