Variant report

Variant	rs550153902
Chromosome Location	chr9:136756110-136756111
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136754690..136760274-chr9:136856094..136858875,6	MCF-7	breast:
2	chr9:136754087..136756664-chr9:136788614..136790293,2	MCF-7	breast:
3	chr9:136744004..136756386-chr9:136850728..136860313,29	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1035272	chr9:136665308-136772256	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv894126	chr9:136747832-136779153	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv894127	chr9:136747832-136811772	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv615708	chr9:136753246-136757253	Weak transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv615709	chr9:136753246-136758586	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv1801832	chr9:136753246-136759587	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv1798102	chr9:136753246-136771319	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv1832030	chr9:136753246-136785840	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1829795	chr9:136753246-136787253	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
17	nsv894129	chr9:136754076-136779153	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv3403453	chr9:136755356-136758104	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv466623	chr9:136755590-136762232	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv615710	chr9:136755590-136762232	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv3507687	chr9:136755606-136758379	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	esv3507688	chr9:136755606-136758379	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136729600-136780000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:136729800-136762600	Weak transcription	Right Ventricle	heart
3	chr9:136736000-136760000	Weak transcription	Primary B cells from cord blood	blood
4	chr9:136736800-136756200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:136740200-136757400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr9:136747600-136780800	Weak transcription	Right Atrium	heart
7	chr9:136748200-136762200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:136748400-136758000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:136748800-136770600	Weak transcription	Esophagus	oesophagus
10	chr9:136750000-136756200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:136750800-136756400	Enhancers	Liver	Liver
12	chr9:136751600-136768200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr9:136753000-136756200	Enhancers	NH-A	brain
14	chr9:136753000-136813200	Weak transcription	Aorta	Aorta
15	chr9:136753200-136756200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr9:136753600-136757600	Weak transcription	Lung	lung
17	chr9:136753800-136757000	Enhancers	HepG2	liver
18	chr9:136753800-136762400	Weak transcription	Adipose Nuclei	Adipose
19	chr9:136754000-136757400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:136754000-136758200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr9:136754200-136757400	Weak transcription	Brain Hippocampus Middle	brain
22	chr9:136754200-136757800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:136754200-136762600	Weak transcription	Fetal Lung	lung
24	chr9:136754400-136757400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr9:136754400-136757400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:136754600-136756400	Enhancers	Hela-S3	cervix
27	chr9:136754600-136757600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:136754800-136765200	Weak transcription	GM12878-XiMat	blood
29	chr9:136755400-136756200	ZNF genes & repeats	Spleen	Spleen
30	chr9:136755400-136757000	Weak transcription	Stomach Mucosa	stomach
31	chr9:136755400-136757600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:136755400-136760800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr9:136755400-136769400	Weak transcription	Fetal Brain Female	brain
34	chr9:136755400-136769600	Weak transcription	Brain Anterior Caudate	brain
35	chr9:136755600-136756200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr9:136755600-136756400	ZNF genes & repeats	Fetal Stomach	stomach
37	chr9:136755600-136757400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:136755600-136757400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr9:136755600-136757400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:136755600-136762400	Weak transcription	HSMMtube	muscle
41	chr9:136755600-136769600	Weak transcription	Fetal Brain Male	brain
42	chr9:136755600-136771800	Weak transcription	HMEC	breast
43	chr9:136755600-136776000	Weak transcription	NHEK	skin
44	chr9:136755800-136756200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr9:136755800-136756200	ZNF genes & repeats	Brain Germinal Matrix	brain
46	chr9:136755800-136756200	ZNF genes & repeats	Fetal Intestine Small	intestine
47	chr9:136755800-136756200	Genic enhancers	HSMM	muscle
48	chr9:136755800-136757000	Weak transcription	A549	lung
49	chr9:136755800-136757200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:136755800-136757400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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