Variant report

Variant	rs550155400
Chromosome Location	chr8:92404912-92404913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv891190	chr8:92354921-92484872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv523642	chr8:92391870-92542963	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1018648	chr8:92399692-92527826	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:92403400-92406000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:92403600-92405800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:92403800-92405200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:92403800-92405800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:92404200-92405200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr8:92404200-92405600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:92404200-92405800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:92404200-92405800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:92404400-92405400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:92404600-92405400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr8:92404800-92406200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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