Variant report

Variant	rs550284710
Chromosome Location	chr4:143325426-143325427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr4:143325282-143325739	MCF10A-Er-Src	breast:	n/a	chr4:143325403-143325414
2	STAT3	chr4:143325310-143325679	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr4:143325211-143326286	MCF10A-Er-Src	breast:	n/a	chr4:143326262-143326274 chr4:143325952-143325963
4	POLR2A	chr4:143325287-143325583	MCF10A-Er-Src	breast:	n/a	n/a
5	FOXA2	chr4:143325339-143326021	A549	lung:	n/a	n/a
6	POLR2A	chr4:143324039-143328578	MCF10A-Er-Src	breast:	n/a	n/a
7	TCF12	chr4:143325261-143327706	A549	lung:	n/a	chr4:143327642-143327651
8	CBX3	chr4:143325211-143325787	HCT-116	colon:	n/a	n/a
9	FOS	chr4:143325274-143325785	MCF10A-Er-Src	breast:	n/a	chr4:143325403-143325414
10	FOS	chr4:143325212-143326250	MCF10A-Er-Src	breast:	n/a	chr4:143325403-143325414
11	POLR2A	chr4:143325239-143325642	HCT-116	colon:	n/a	n/a
12	FOSL1	chr4:143325231-143325763	HCT-116	colon:	n/a	n/a
13	MYC	chr4:143325208-143325633	MCF10A-Er-Src	breast:	n/a	n/a
14	SPI1	chr4:143325421-143325847	HL-60	blood:	n/a	chr4:143325658-143325667 chr4:143325657-143325670 chr4:143325659-143325666 chr4:143325656-143325669
15	JUND	chr4:143325208-143325762	HCT-116	colon:	n/a	n/a
16	POLR2A	chr4:143325282-143325526	HCT-116	colon:	n/a	n/a
17	STAT3	chr4:143325233-143326245	MCF10A-Er-Src	breast:	n/a	chr4:143325952-143325963
18	SP1	chr4:143325221-143325856	HCT-116	colon:	n/a	n/a
19	FOS	chr4:143325218-143325930	HUVEC	blood vessel:	n/a	chr4:143325403-143325414
20	JUND	chr4:143325234-143325773	HCT-116	colon:	n/a	n/a
21	MAX	chr4:143325196-143325737	HCT-116	colon:	n/a	n/a
22	FOSL1	chr4:143325074-143326012	HCT-116	colon:	n/a	n/a
23	MYC	chr4:143325303-143325609	MCF10A-Er-Src	breast:	n/a	n/a
24	TCF7L2	chr4:143325287-143325653	PANC-1	pancreas:	n/a	n/a
25	SP1	chr4:143325055-143325905	HCT-116	colon:	n/a	n/a
26	POLR2A	chr4:143325326-143325901	HUVEC	blood vessel:	n/a	n/a
27	CEBPB	chr4:143325202-143325942	HCT-116	colon:	n/a	chr4:143325613-143325626 chr4:143325870-143325882
28	STAT3	chr4:143325310-143325684	MCF10A-Er-Src	breast:	n/a	n/a
29	STAT3	chr4:143325233-143326894	MCF10A-Er-Src	breast:	n/a	chr4:143326502-143326513 chr4:143326610-143326617 chr4:143326262-143326274 chr4:143325952-143325963 chr4:143326641-143326648
30	GATA2	chr4:143325196-143325795	HUVEC	blood vessel:	n/a	n/a
31	YY1	chr4:143325295-143325554	HCT-116	colon:	n/a	n/a
32	FOSL2	chr4:143325166-143325965	A549	lung:	n/a	n/a
33	FOS	chr4:143325229-143327049	MCF10A-Er-Src	breast:	n/a	chr4:143325403-143325414

Variant related genes	Relation type
INPP4B	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv830100	chr4:143216951-143393305	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv968011	chr4:143325315-143333139	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143300200-143326200	Weak transcription	Aorta	Aorta
2	chr4:143301200-143326200	Weak transcription	Gastric	stomach
3	chr4:143313000-143326200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:143320600-143326600	Active TSS	Primary T cells fromperipheralblood	blood
5	chr4:143320800-143328000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:143321000-143326800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr4:143321400-143326600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:143321400-143326600	Active TSS	Primary T killer memory cells from peripheral blood	blood
9	chr4:143322000-143326400	Active TSS	Fetal Muscle Leg	muscle
10	chr4:143322200-143326600	Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr4:143322200-143326600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr4:143322400-143326400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:143322600-143326600	Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr4:143323200-143325600	Enhancers	Fetal Heart	heart
15	chr4:143323200-143326600	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr4:143323400-143327200	Weak transcription	Small Intestine	intestine
17	chr4:143323600-143326200	Weak transcription	Ovary	ovary
18	chr4:143323600-143326400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr4:143323600-143326600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:143323600-143326600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:143323600-143326800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr4:143323600-143326800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:143323800-143326600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
24	chr4:143323800-143326800	Active TSS	NHLF	lung
25	chr4:143323800-143327000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:143324000-143326200	Weak transcription	Brain Germinal Matrix	brain
27	chr4:143324000-143326600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr4:143324000-143326800	Active TSS	Psoas Muscle	Psoas
29	chr4:143324200-143326000	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr4:143324200-143326200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr4:143324200-143326400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr4:143324200-143326400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
33	chr4:143324200-143326600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr4:143324400-143325600	Weak transcription	Brain Angular Gyrus	brain
35	chr4:143324400-143326000	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr4:143324400-143326000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr4:143324400-143326200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr4:143324400-143326200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr4:143324400-143326200	Weak transcription	Brain Substantia Nigra	brain
40	chr4:143324400-143326200	Weak transcription	Pancreas	Pancrea
41	chr4:143324400-143326200	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr4:143324400-143326200	Weak transcription	Right Ventricle	heart
43	chr4:143324400-143326400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr4:143324400-143326400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr4:143324400-143326400	Active TSS	Primary T cells from cord blood	blood
46	chr4:143324400-143326600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr4:143324400-143326600	Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr4:143324400-143326600	Active TSS	HMEC	breast
49	chr4:143324400-143326600	Active TSS	HSMM	muscle
50	chr4:143324400-143326600	Active TSS	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links