Variant report

Variant	rs550290179
Chromosome Location	chr7:64256002-64256003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:64253690..64256534-chr7:64497237..64499995,2	K562	blood:

Variant related genes	Relation type
ENSG00000239985	Chromatin interaction
ENSG00000234585	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2764000	chr7:63766980-64275251	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
4	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
5	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv888271	chr7:63961212-64295884	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv888273	chr7:63990100-64291622	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
9	nsv888274	chr7:63990100-64331123	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
10	nsv888275	chr7:63990100-64468590	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
11	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv888279	chr7:64094285-64331123	Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
13	esv3394685	chr7:64150166-64268675	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv1022042	chr7:64226499-64566945	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
15	nsv1026390	chr7:64240323-64414364	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
16	nsv888281	chr7:64250409-64295884	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	nsv970857	chr7:64254831-64256462	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64254200-64256200	Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr7:64254400-64256200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr7:64254400-64256200	Active TSS	H1 Cell Line	embryonic stem cell
4	chr7:64254400-64256200	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr7:64254400-64256200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:64254400-64256400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr7:64254400-64256400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:64254400-64256400	Active TSS	A549	lung
9	chr7:64254400-64256400	Active TSS	NHDF-Ad	bronchial
10	chr7:64254400-64256800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:64254600-64256200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:64254600-64256200	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr7:64254600-64256200	Active TSS	Brain Germinal Matrix	brain
14	chr7:64254600-64256200	Active TSS	HSMM	muscle
15	chr7:64254600-64256400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:64254600-64256600	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr7:64254600-64256800	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr7:64254600-64256800	Active TSS	GM12878-XiMat	blood
19	chr7:64255000-64256400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:64255400-64256200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:64255400-64256200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:64255400-64256200	Weak transcription	Gastric	stomach
23	chr7:64255400-64256200	Weak transcription	Left Ventricle	heart
24	chr7:64255400-64256200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:64255400-64256200	Weak transcription	Spleen	Spleen
26	chr7:64255400-64256400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr7:64255400-64256800	Enhancers	Pancreas	Pancrea
28	chr7:64255400-64256800	Enhancers	Small Intestine	intestine
29	chr7:64255400-64259600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:64255400-64259600	Weak transcription	Lung	lung
31	chr7:64255400-64277200	Weak transcription	Aorta	Aorta
32	chr7:64255600-64256200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr7:64255600-64256200	Enhancers	Adipose Nuclei	Adipose
34	chr7:64255600-64256200	Weak transcription	Esophagus	oesophagus
35	chr7:64255600-64256200	Flanking Active TSS	Fetal Brain Female	brain
36	chr7:64255600-64256400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr7:64255600-64256400	Enhancers	Primary B cells from peripheral blood	blood
38	chr7:64255600-64256400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr7:64255600-64256400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr7:64255600-64256400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr7:64255600-64256400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr7:64255600-64256400	Enhancers	Colon Smooth Muscle	Colon
43	chr7:64255600-64256400	Enhancers	Fetal Heart	heart
44	chr7:64255600-64256400	Weak transcription	Ovary	ovary
45	chr7:64255600-64256400	Enhancers	Stomach Mucosa	stomach
46	chr7:64255600-64256400	Flanking Active TSS	HMEC	breast
47	chr7:64255600-64256600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:64255600-64256600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr7:64255600-64256800	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr7:64255600-64256800	Enhancers	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links