Variant report

Variant	rs550304235
Chromosome Location	chr17:15153333-15153334
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv530760	chr17:15152791-15162532	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15132200-15158800	Weak transcription	Hela-S3	cervix
2	chr17:15135800-15160200	Weak transcription	Pancreas	Pancrea
3	chr17:15137200-15158000	Weak transcription	Stomach Mucosa	stomach
4	chr17:15139800-15160200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr17:15142600-15154000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr17:15142600-15159000	Weak transcription	Fetal Kidney	kidney
7	chr17:15142600-15159000	Weak transcription	NH-A	brain
8	chr17:15142800-15159200	Weak transcription	Fetal Brain Male	brain
9	chr17:15143000-15154000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr17:15143000-15156800	Weak transcription	Gastric	stomach
11	chr17:15146800-15160400	Strong transcription	A549	lung
12	chr17:15147400-15153400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr17:15148000-15159000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr17:15148200-15159000	Strong transcription	Fetal Muscle Trunk	muscle
15	chr17:15148200-15160400	Strong transcription	Fetal Stomach	stomach
16	chr17:15148400-15158000	Genic enhancers	Left Ventricle	heart
17	chr17:15148800-15153400	Weak transcription	Aorta	Aorta
18	chr17:15148800-15154200	Weak transcription	Spleen	Spleen
19	chr17:15149800-15155400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr17:15149800-15160200	Genic enhancers	Brain Hippocampus Middle	brain
21	chr17:15150600-15156000	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr17:15150800-15153400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr17:15150800-15153600	Enhancers	Brain Substantia Nigra	brain
24	chr17:15150800-15154600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr17:15150800-15154800	Genic enhancers	Rectal Smooth Muscle	rectum
26	chr17:15150800-15157400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
27	chr17:15150800-15159400	Genic enhancers	Brain Cingulate Gyrus	brain
28	chr17:15150800-15160200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr17:15150800-15160200	Genic enhancers	Adipose Nuclei	Adipose
30	chr17:15151000-15154400	Strong transcription	Fetal Lung	lung
31	chr17:15151000-15160000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr17:15151200-15154200	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr17:15151200-15154600	Enhancers	Brain Angular Gyrus	brain
34	chr17:15151200-15159200	Genic enhancers	Brain Anterior Caudate	brain
35	chr17:15151400-15154000	Weak transcription	HSMMtube	muscle
36	chr17:15151400-15158000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
37	chr17:15151400-15160000	Strong transcription	HUVEC	blood vessel
38	chr17:15151400-15160000	Weak transcription	K562	blood
39	chr17:15151400-15160200	Strong transcription	HSMM	muscle
40	chr17:15151400-15160200	Genic enhancers	NHDF-Ad	bronchial
41	chr17:15151600-15153600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr17:15151600-15154800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr17:15151600-15159000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr17:15151600-15159200	Strong transcription	NHLF	lung
45	chr17:15151800-15154000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr17:15151800-15154600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr17:15151800-15156000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr17:15151800-15158800	Strong transcription	Osteobl	bone
49	chr17:15151800-15159000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr17:15151800-15159400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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