Variant report

Variant	rs550307433
Chromosome Location	chr3:112089117-112089118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877341	chr3:112079277-112125521	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1002567	chr3:112088498-112144063	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3330123	chr3:112088854-112089689	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112066000-112089800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:112069200-112095400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:112070800-112090600	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:112077200-112094200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:112077600-112107200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:112080000-112096000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:112081200-112092800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:112081400-112091600	Weak transcription	Primary T cells from cord blood	blood
9	chr3:112082200-112096000	Weak transcription	Fetal Stomach	stomach
10	chr3:112082600-112094600	Weak transcription	Brain Anterior Caudate	brain
11	chr3:112083400-112092200	Weak transcription	Primary B cells from cord blood	blood
12	chr3:112083800-112090600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:112083800-112092200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr3:112084000-112090600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr3:112084000-112094800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:112084200-112092600	Weak transcription	Fetal Kidney	kidney
17	chr3:112084400-112091600	Weak transcription	Placenta	Placenta
18	chr3:112084600-112093200	Weak transcription	Fetal Lung	lung
19	chr3:112084800-112096000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:112084800-112096800	Weak transcription	Fetal Muscle Leg	muscle
21	chr3:112085000-112089800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr3:112085000-112095600	Weak transcription	Thymus	Thymus
23	chr3:112085400-112096000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr3:112085600-112095400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:112085600-112096000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:112085800-112089200	Weak transcription	Fetal Brain Female	brain
27	chr3:112085800-112091400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr3:112085800-112091400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr3:112085800-112091400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:112085800-112092200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr3:112085800-112096400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr3:112085800-112096600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:112085800-112101400	Weak transcription	Aorta	Aorta
34	chr3:112086000-112095000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr3:112086000-112095600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:112086200-112091200	Weak transcription	Brain Angular Gyrus	brain
37	chr3:112086200-112091400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:112086200-112092200	Weak transcription	Fetal Thymus	thymus
39	chr3:112087600-112096400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr3:112088000-112089600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr3:112088000-112090600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr3:112088200-112089800	Weak transcription	Brain Germinal Matrix	brain
43	chr3:112088200-112092800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:112088400-112091400	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links