Variant report

Variant	rs550323789
Chromosome Location	chr14:36769602-36769603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:36768912..36770474-chr14:36787292..36789766,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151332	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	esv3429093	chr14:36674701-36827119	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3367425	chr14:36674721-36827089	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1042408	chr14:36693910-36810554	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv542043	chr14:36693910-36810554	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv34543	chr14:36736349-36772564	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv2751271	chr14:36745649-36782949	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv534143	chr14:36747497-36787893	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv2752577	chr14:36768276-36805529	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36761000-36785000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:36762000-36770400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr14:36762000-36778800	Weak transcription	Fetal Intestine Small	intestine
4	chr14:36762600-36769800	Weak transcription	NHLF	lung
5	chr14:36763800-36777800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr14:36764400-36784000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr14:36764800-36770800	Strong transcription	Fetal Muscle Trunk	muscle
8	chr14:36765000-36779400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:36765000-36781200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:36765200-36781400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:36765400-36771000	Strong transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:36765400-36773000	Strong transcription	Fetal Brain Female	brain
13	chr14:36765400-36775200	Strong transcription	Adipose Nuclei	Adipose
14	chr14:36765400-36781400	Strong transcription	Placenta	Placenta
15	chr14:36765400-36788800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:36765600-36770800	Strong transcription	Fetal Lung	lung
17	chr14:36765600-36781000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:36765800-36770000	Strong transcription	Liver	Liver
19	chr14:36765800-36770400	Strong transcription	Brain Anterior Caudate	brain
20	chr14:36765800-36771000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:36765800-36771000	Strong transcription	Fetal Intestine Large	intestine
22	chr14:36765800-36771200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:36765800-36772000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:36765800-36775600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr14:36765800-36776400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr14:36765800-36780000	Weak transcription	K562	blood
27	chr14:36765800-36781000	Strong transcription	Duodenum Mucosa	Duodenum
28	chr14:36765800-36781200	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr14:36765800-36782200	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr14:36766000-36769800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr14:36766000-36770600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr14:36766000-36771000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:36766000-36771000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr14:36766000-36771000	Strong transcription	Fetal Kidney	kidney
35	chr14:36766000-36775200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr14:36766000-36777800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr14:36766000-36781000	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr14:36766000-36781000	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr14:36766000-36781400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr14:36766000-36783400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr14:36766200-36772200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:36766200-36778000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr14:36766200-36781200	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:36766200-36781200	Strong transcription	Fetal Thymus	thymus
45	chr14:36766200-36781200	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr14:36766200-36781400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr14:36766200-36785400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr14:36766400-36771000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr14:36766400-36779200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr14:36766600-36788000	Weak transcription	Fetal Heart	heart

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