Variant report

Variant	rs550352905
Chromosome Location	chr15:58356970-58356971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569596	chr15:58355798-58408763	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3427988	chr15:58356685-58359533	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58353400-58358800	Active TSS	K562	blood
2	chr15:58353600-58359000	Active TSS	Fetal Kidney	kidney
3	chr15:58354200-58358800	Active TSS	Ovary	ovary
4	chr15:58354400-58358800	Active TSS	Right Atrium	heart
5	chr15:58355800-58357200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr15:58355800-58357200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
7	chr15:58356000-58357400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
8	chr15:58356400-58357000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr15:58356600-58357000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr15:58356600-58357000	Active TSS	Fetal Stomach	stomach
11	chr15:58356800-58357000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr15:58356800-58357000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr15:58356800-58357000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
14	chr15:58356800-58357000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
15	chr15:58356800-58357200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
16	chr15:58356800-58357200	Active TSS	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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