Variant report

Variant	rs550359663
Chromosome Location	chr11:10758237-10758238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10645775..10647638-chr11:10757654..10759171,2	K562	blood:
2	chr11:10756194..10759055-chr11:10771623..10774261,2	K562	blood:
3	chr11:10678917..10680760-chr11:10757378..10759987,2	K562	blood:
4	chr11:10726070..10727726-chr11:10756782..10759046,2	K562	blood:
5	chr11:10756121..10759478-chr11:10761013..10764437,4	K562	blood:
6	chr11:10429637..10431690-chr11:10756328..10758513,2	MCF-7	breast:
7	chr11:10756589..10759055-chr11:10771202..10773123,2	K562	blood:
8	chr11:10755622..10759318-chr11:10762937..10767532,4	K562	blood:
9	chr11:10756270..10758622-chr11:10829204..10831091,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000246308	Chromatin interaction
ENSG00000110321	Chromatin interaction
ENSG00000133805	Chromatin interaction
ENSG00000198730	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv38696	chr11:10757081-10762532	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10754200-10759600	Weak transcription	Right Atrium	heart
2	chr11:10756600-10772000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:10757400-10758600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:10757400-10763600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:10757600-10758400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:10757600-10762600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:10757800-10758400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:10757800-10759600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:10757800-10762400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:10757800-10763400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:10757800-10763400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:10757800-10764000	Weak transcription	Liver	Liver
13	chr11:10758000-10758400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:10758000-10758400	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr11:10758000-10758400	Enhancers	Stomach Smooth Muscle	stomach
16	chr11:10758000-10763000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:10758000-10763400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:10758000-10763400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:10758200-10758400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:10758200-10758400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:10758200-10758400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:10758200-10758400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:10758200-10758400	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr11:10758200-10758400	Enhancers	A549	lung
25	chr11:10758200-10758400	Active TSS	Hela-S3	cervix
26	chr11:10758200-10758400	Enhancers	NH-A	brain
27	chr11:10758200-10758400	Enhancers	NHEK	skin
28	chr11:10758200-10759200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:10758200-10759400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:10758200-10762200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:10758200-10763400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr11:10758200-10763400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:10758200-10763400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr11:10758200-10763400	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:10758200-10763400	Weak transcription	K562	blood
36	chr11:10758200-10763600	Weak transcription	Fetal Intestine Large	intestine
37	chr11:10758200-10763600	Weak transcription	Ovary	ovary
38	chr11:10758200-10763800	Weak transcription	HSMM	muscle
39	chr11:10758200-10763800	Weak transcription	Osteobl	bone
40	chr11:10758200-10764000	Weak transcription	Fetal Intestine Small	intestine
41	chr11:10758200-10764000	Weak transcription	HSMMtube	muscle
42	chr11:10758200-10765000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr11:10758200-10771200	Weak transcription	Esophagus	oesophagus

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