Variant report

Variant	rs550391377
Chromosome Location	chr6:28155928-28155929
allele	-/GAGGATCCATAATGGA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000269293	Chromatin interaction
ENSG00000261839	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000196331	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883514	chr6:28155418-28185726	Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28155000-28156800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr6:28155000-28157800	ZNF genes & repeats	Liver	Liver
3	chr6:28155200-28156200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
4	chr6:28155200-28157200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
5	chr6:28155200-28157400	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr6:28155200-28158000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:28155800-28156800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:28155800-28157000	ZNF genes & repeats	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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