Variant report

Variant	rs550418793
Chromosome Location	chr11:72311495-72311496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72311450..72313060-chr11:72334269..72335781,2	K562	blood:
2	chr11:72309197..72311837-chr11:72341889..72344712,2	K562	blood:
3	chr11:72310303..72312102-chr11:72363033..72365890,2	MCF-7	breast:
4	chr11:72310686..72313140-chr11:72320651..72322680,2	K562	blood:
5	chr11:72310660..72312266-chr11:72342413..72344790,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
2	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
3	esv1832864	chr11:72270965-72389125	Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
5	nsv468633	chr11:72281884-72336564	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	nsv468634	chr11:72281884-72336564	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
7	nsv555406	chr11:72281884-72336564	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
8	nsv523601	chr11:72281884-72430935	Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
9	nsv468635	chr11:72284569-72336564	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
10	nsv555407	chr11:72284569-72336564	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1042182	chr11:72294042-72348491	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
12	esv3401549	chr11:72310710-72313204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72303600-72313600	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:72304600-72316600	Weak transcription	Left Ventricle	heart
3	chr11:72306400-72315200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:72308400-72312200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:72310200-72311600	Enhancers	Brain Anterior Caudate	brain
6	chr11:72310200-72312000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr11:72310200-72312200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:72310400-72311600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:72310400-72312000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr11:72310400-72312000	Enhancers	A549	lung
11	chr11:72310400-72312400	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:72310400-72312800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:72310400-72316800	Weak transcription	Colonic Mucosa	Colon
14	chr11:72310600-72312000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:72310600-72312000	Genic enhancers	Spleen	Spleen
16	chr11:72310600-72316000	Weak transcription	Right Ventricle	heart
17	chr11:72311000-72311600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:72311000-72311600	Weak transcription	HSMM	muscle
19	chr11:72311000-72312200	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr11:72311000-72313600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:72311000-72316600	Weak transcription	Esophagus	oesophagus
22	chr11:72311200-72312000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:72311200-72312000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr11:72311200-72313600	Weak transcription	Brain Angular Gyrus	brain
25	chr11:72311200-72314400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:72311200-72316000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:72311400-72311600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
28	chr11:72311400-72311600	Bivalent Enhancer	Fetal Intestine Large	intestine
29	chr11:72311400-72311600	Bivalent Enhancer	Fetal Intestine Small	intestine
30	chr11:72311400-72312000	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr11:72311400-72312000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr11:72311400-72312000	Bivalent Enhancer	Placenta	Placenta
33	chr11:72311400-72312000	Enhancers	HSMMtube	muscle
34	chr11:72311400-72314600	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links