Variant report

Variant	rs550455922
Chromosome Location	chr5:41587974-41587975
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:41587957-41588002	A549	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:41587931-41587981	A549	lung:	n/a
2	chr5:41587931-41587981	HRE	kidney:	n/a
3	chr5:41587931-41587981	HMEC	breast:	n/a
4	chr5:41587931-41587981	PFSK-1	brain:	n/a
5	chr5:41587931-41587981	U87	brain:	n/a
6	chr5:41587931-41587981	BJ	skin:	n/a
7	chr5:41587931-41587981	GM12878	blood:	n/a
8	chr5:41587931-41587981	HPAEpiC	pulmonary alveolar:	n/a
9	chr5:41587931-41587981	Caco-2	colon:	n/a
10	chr5:41587931-41587981	ProgFib	skin:	n/a
11	chr5:41587931-41587981	PANC-1	pancreas:	n/a
12	chr5:41587931-41587981	RPTEC	kidney:	n/a
13	chr5:41587931-41587981	H1-hESC	embryonic stem cell:	embryo
14	chr5:41587931-41587981	HCM	heart:	n/a
15	chr5:41587931-41587981	AG09319	gingival:	n/a
16	chr5:41587931-41587981	HepG2	liver:	n/a
17	chr5:41587931-41587981	Hepatocyte	liver:	n/a
18	chr5:41587931-41587981	ovcar-3	ovarian:	n/a
19	chr5:41587931-41587981	T-47D	breast:	n/a
20	chr5:41587931-41587981	MCF10A-Er-Src	breast:	n/a
21	chr5:41587931-41587981	SK-N-SH	brain:	n/a
22	chr5:41587931-41587981	CMK	blood:	n/a
23	chr5:41587931-41587981	AG04449	skin:	fetal
24	chr5:41587931-41587981	BE2_C	brain:	n/a
25	chr5:41587931-41587981	HRPEpiC	eye:	n/a
26	chr5:41587931-41587981	HCF	heart:	n/a
27	chr5:41587931-41587981	HNPCEpiC	eye:	n/a
28	chr5:41587931-41587981	SK-N-SH_RA	brain:	n/a
29	chr5:41587931-41587981	SK-N-MC	brain:	n/a
30	chr5:41587931-41587981	HL-60	blood:	n/a
31	chr5:41587931-41587981	GM06990	blood:	n/a
32	chr5:41587931-41587981	SKMC	muscle:	n/a
33	chr5:41587931-41587981	LNCaP	prostate:	n/a
34	chr5:41587931-41587981	GM12891	blood:	n/a
35	chr5:41587931-41587981	HEEpiC	esophagus:	n/a
36	chr5:41587931-41587981	ECC-1	luminal epithelium:	n/a
37	chr5:41587931-41587981	HRCEpiC	kidney:	n/a
38	chr5:41587931-41587981	NHBE	bronchial:	n/a
39	chr5:41587931-41587981	NT2-D1	testis:	n/a
40	chr5:41587931-41587981	HIPEpiC	eye:	n/a
41	chr5:41587931-41587981	HUVEC	blood vessel:	n/a
42	chr5:41587931-41587981	SAEC	small airway:	n/a
43	chr5:41587931-41587981	AG09309	skin:	n/a
44	chr5:41587931-41587981	GM12892	blood:	n/a
45	chr5:41587931-41587981	NB4	blood:	n/a
46	chr5:41587931-41587981	NHDF-neo	bronchial:	n/a
47	chr5:41587931-41587981	MCF-7	breast:	n/a
48	chr5:41587931-41587981	HCT-116	colon:	n/a
49	chr5:41587931-41587981	AoSMC	blood vessel:	n/a
50	chr5:41587931-41587981	K562	blood:	n/a

No data

Variant related genes	Relation type
ENSG00000251478	TF binding region
ENSG00000251478	CpG island

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881563	chr5:41560079-41616100	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2753438	chr5:41571309-41600812	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv462124	chr5:41585079-41596269	Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv597880	chr5:41585079-41596269	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv881628	chr5:41585079-41600651	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv3470450	chr5:41585589-41596580	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3470451	chr5:41585589-41596580	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv823059	chr5:41585612-41596478	Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv524669	chr5:41586405-41596269	Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	nsv818349	chr5:41586405-41596269	Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv1800641	chr5:41587271-41595104	Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv441952	chr5:41587271-41595104	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41587800-41588000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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