Variant report

Variant	rs550465620
Chromosome Location	chr11:100676333-100676334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100671702..100674321-chr11:100674675..100677344,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3472040	chr11:100676328-100677816	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100645600-100679800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:100645800-100679600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:100656600-100679600	Weak transcription	Fetal Lung	lung
4	chr11:100660400-100679400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:100660400-100679600	Weak transcription	Stomach Mucosa	stomach
6	chr11:100660400-100683600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:100660600-100679600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:100660600-100679600	Weak transcription	HSMM	muscle
9	chr11:100660600-100680000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:100660600-100680400	Weak transcription	Left Ventricle	heart
11	chr11:100662600-100679600	Weak transcription	Fetal Heart	heart
12	chr11:100663000-100691800	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:100663200-100679600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:100663200-100679600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:100663400-100679800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:100666400-100679600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:100667200-100685200	Weak transcription	Primary B cells from cord blood	blood
18	chr11:100667800-100679600	Weak transcription	Fetal Intestine Small	intestine
19	chr11:100669600-100680400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:100669800-100677200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:100669800-100679600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:100669800-100679800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:100670000-100697400	Weak transcription	Placenta	Placenta
24	chr11:100673600-100687600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:100675600-100676600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr11:100676000-100679800	Weak transcription	Brain Substantia Nigra	brain

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