Variant report

Variant	rs550466215
Chromosome Location	chr1:76489591-76489592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754129	chr1:76489579-76529279	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76484800-76489600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:76487400-76491000	Enhancers	Fetal Lung	lung
3	chr1:76488200-76491800	Enhancers	Primary T cells from cord blood	blood
4	chr1:76488400-76490400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr1:76488600-76490200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:76488600-76490400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:76488800-76490600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:76489000-76490000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr1:76489000-76490400	Enhancers	Primary hematopoietic stem cells	blood
10	chr1:76489000-76490600	Enhancers	NHEK	skin
11	chr1:76489200-76490200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr1:76489200-76490400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:76489200-76490600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr1:76489200-76490600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:76489200-76490800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr1:76489200-76490800	Enhancers	HMEC	breast
17	chr1:76489400-76489800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:76489400-76489800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr1:76489400-76489800	Enhancers	Left Ventricle	heart
20	chr1:76489400-76490600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:76489400-76490800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:76489400-76490800	Enhancers	Fetal Heart	heart

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